Hb_003147_070

Information

Type transcription factor
Description TF Family: NAC
Location Contig3147: 60728-64753
Sequence    

Annotation

kegg
ID rcu:RCOM_1326820
description transcription factor, putative
nr
ID XP_012070224.1
description PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
swissprot
ID Q9SCK6
description NAC domain-containing protein 62 OS=Arabidopsis thaliana GN=NAC062 PE=1 SV=1
trembl
ID R4NEX4
description NAC transcription factor 075 OS=Jatropha curcas GN=JCGZ_02538 PE=4 SV=1
Gene Ontology
ID GO:0044464
description nac domain-containing protein 45-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33235: 60679-61045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003147_070 0.0 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
2 Hb_031822_010 0.1230280044 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
3 Hb_012545_030 0.1404679814 - - Polyadenylate-binding protein RBP47C [Glycine soja]
4 Hb_080362_010 0.1447042342 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
5 Hb_000421_230 0.1489146962 - - retinal degeneration B beta, putative [Ricinus communis]
6 Hb_000510_230 0.1558810767 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
7 Hb_004125_060 0.1575777354 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000046_310 0.1578317938 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
9 Hb_008768_020 0.1596690907 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
10 Hb_005701_110 0.1676292043 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
11 Hb_003776_040 0.16888154 - - PREDICTED: RING finger protein 165-like isoform X2 [Populus euphratica]
12 Hb_004920_070 0.1701875811 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
13 Hb_002042_170 0.1711375405 - - RING/U-box superfamily protein [Theobroma cacao]
14 Hb_000011_050 0.1784522408 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
15 Hb_018790_050 0.1801790224 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
16 Hb_171900_020 0.1806671021 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
17 Hb_001728_020 0.1822337482 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
18 Hb_004117_170 0.1822848266 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
19 Hb_006120_150 0.186044814 - - invertase [Hevea brasiliensis]
20 Hb_013358_020 0.1899712306 - - ccr4-associated factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003147_070 Hb_003147_070 Hb_031822_010 Hb_031822_010 Hb_003147_070--Hb_031822_010 Hb_012545_030 Hb_012545_030 Hb_003147_070--Hb_012545_030 Hb_080362_010 Hb_080362_010 Hb_003147_070--Hb_080362_010 Hb_000421_230 Hb_000421_230 Hb_003147_070--Hb_000421_230 Hb_000510_230 Hb_000510_230 Hb_003147_070--Hb_000510_230 Hb_004125_060 Hb_004125_060 Hb_003147_070--Hb_004125_060 Hb_000072_190 Hb_000072_190 Hb_031822_010--Hb_000072_190 Hb_000046_310 Hb_000046_310 Hb_031822_010--Hb_000046_310 Hb_004994_250 Hb_004994_250 Hb_031822_010--Hb_004994_250 Hb_018790_050 Hb_018790_050 Hb_031822_010--Hb_018790_050 Hb_013358_020 Hb_013358_020 Hb_031822_010--Hb_013358_020 Hb_012545_030--Hb_000421_230 Hb_005701_110 Hb_005701_110 Hb_012545_030--Hb_005701_110 Hb_006120_150 Hb_006120_150 Hb_012545_030--Hb_006120_150 Hb_001511_030 Hb_001511_030 Hb_012545_030--Hb_001511_030 Hb_001318_150 Hb_001318_150 Hb_012545_030--Hb_001318_150 Hb_080362_010--Hb_000046_310 Hb_001728_020 Hb_001728_020 Hb_080362_010--Hb_001728_020 Hb_080362_010--Hb_018790_050 Hb_004117_170 Hb_004117_170 Hb_080362_010--Hb_004117_170 Hb_001376_010 Hb_001376_010 Hb_080362_010--Hb_001376_010 Hb_003581_280 Hb_003581_280 Hb_000421_230--Hb_003581_280 Hb_000045_260 Hb_000045_260 Hb_000421_230--Hb_000045_260 Hb_000421_230--Hb_004125_060 Hb_000638_280 Hb_000638_280 Hb_000421_230--Hb_000638_280 Hb_004108_240 Hb_004108_240 Hb_000421_230--Hb_004108_240 Hb_000925_030 Hb_000925_030 Hb_000421_230--Hb_000925_030 Hb_000394_110 Hb_000394_110 Hb_000510_230--Hb_000394_110 Hb_000529_150 Hb_000529_150 Hb_000510_230--Hb_000529_150 Hb_004920_070 Hb_004920_070 Hb_000510_230--Hb_004920_070 Hb_008768_020 Hb_008768_020 Hb_000510_230--Hb_008768_020 Hb_000069_240 Hb_000069_240 Hb_000510_230--Hb_000069_240 Hb_000684_100 Hb_000684_100 Hb_004125_060--Hb_000684_100 Hb_161901_020 Hb_161901_020 Hb_004125_060--Hb_161901_020 Hb_000009_220 Hb_000009_220 Hb_004125_060--Hb_000009_220 Hb_000979_060 Hb_000979_060 Hb_004125_060--Hb_000979_060 Hb_004125_060--Hb_012545_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07721 4.78862 6.08654 2.26379 0.164075 0.228887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55197 3.12658 1.38881 1.0486 0.865458

CAGE analysis