Hb_003151_050

Information

Type desease resistance
Description Gene Name: MMR_HSR1
Location Contig3151: 66003-76339
Sequence    

Annotation

kegg
ID rcu:RCOM_1298600
description GTP-binding protein enga, putative
nr
ID XP_012078840.1
description PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
swissprot
ID A7HYV8
description GTPase Der OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=der PE=3 SV=1
trembl
ID B9S055
description GTP-binding protein enga, putative OS=Ricinus communis GN=RCOM_1298600 PE=3 SV=1
Gene Ontology
ID GO:0005525
description gtp-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33241: 67014-68107 , PASA_asmbl_33242: 73098-75220 , PASA_asmbl_33243: 75251-76371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003151_050 0.0 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
2 Hb_000091_090 0.0587743306 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
3 Hb_023386_080 0.0843941223 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
4 Hb_021650_030 0.0864041725 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
5 Hb_004108_050 0.0879890729 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
6 Hb_000429_170 0.0884723263 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
7 Hb_000665_040 0.0888972615 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
8 Hb_002411_200 0.0890584061 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005357_150 0.0894713662 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_003018_200 0.0897854768 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
11 Hb_055062_030 0.0906595568 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
12 Hb_004951_040 0.0913399834 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
13 Hb_000200_340 0.0921865049 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
14 Hb_163145_020 0.0922188328 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
15 Hb_001671_020 0.0924709643 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
16 Hb_000116_470 0.0940769845 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
17 Hb_000567_260 0.0952087438 - - BnaA09g41440D [Brassica napus]
18 Hb_008289_060 0.0956822862 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
19 Hb_021068_050 0.0962176499 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
20 Hb_034299_060 0.0963870315 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]

Gene co-expression network

sample Hb_003151_050 Hb_003151_050 Hb_000091_090 Hb_000091_090 Hb_003151_050--Hb_000091_090 Hb_023386_080 Hb_023386_080 Hb_003151_050--Hb_023386_080 Hb_021650_030 Hb_021650_030 Hb_003151_050--Hb_021650_030 Hb_004108_050 Hb_004108_050 Hb_003151_050--Hb_004108_050 Hb_000429_170 Hb_000429_170 Hb_003151_050--Hb_000429_170 Hb_000665_040 Hb_000665_040 Hb_003151_050--Hb_000665_040 Hb_000091_090--Hb_021650_030 Hb_000086_570 Hb_000086_570 Hb_000091_090--Hb_000086_570 Hb_002411_200 Hb_002411_200 Hb_000091_090--Hb_002411_200 Hb_001881_020 Hb_001881_020 Hb_000091_090--Hb_001881_020 Hb_000983_100 Hb_000983_100 Hb_000091_090--Hb_000983_100 Hb_002603_100 Hb_002603_100 Hb_023386_080--Hb_002603_100 Hb_000329_040 Hb_000329_040 Hb_023386_080--Hb_000329_040 Hb_000634_100 Hb_000634_100 Hb_023386_080--Hb_000634_100 Hb_044662_070 Hb_044662_070 Hb_023386_080--Hb_044662_070 Hb_000956_010 Hb_000956_010 Hb_023386_080--Hb_000956_010 Hb_000376_050 Hb_000376_050 Hb_023386_080--Hb_000376_050 Hb_021650_030--Hb_002411_200 Hb_021650_030--Hb_000086_570 Hb_002078_450 Hb_002078_450 Hb_021650_030--Hb_002078_450 Hb_014720_080 Hb_014720_080 Hb_021650_030--Hb_014720_080 Hb_021650_030--Hb_001881_020 Hb_005357_150 Hb_005357_150 Hb_004108_050--Hb_005357_150 Hb_000085_310 Hb_000085_310 Hb_004108_050--Hb_000085_310 Hb_026988_020 Hb_026988_020 Hb_004108_050--Hb_026988_020 Hb_027472_180 Hb_027472_180 Hb_004108_050--Hb_027472_180 Hb_004108_050--Hb_023386_080 Hb_002253_070 Hb_002253_070 Hb_000429_170--Hb_002253_070 Hb_007924_020 Hb_007924_020 Hb_000429_170--Hb_007924_020 Hb_034299_060 Hb_034299_060 Hb_000429_170--Hb_034299_060 Hb_000622_040 Hb_000622_040 Hb_000429_170--Hb_000622_040 Hb_000834_270 Hb_000834_270 Hb_000429_170--Hb_000834_270 Hb_000665_040--Hb_002411_200 Hb_002007_310 Hb_002007_310 Hb_000665_040--Hb_002007_310 Hb_000665_040--Hb_000091_090 Hb_000567_260 Hb_000567_260 Hb_000665_040--Hb_000567_260 Hb_007508_070 Hb_007508_070 Hb_000665_040--Hb_007508_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5469 11.9937 4.75068 3.8636 22.3209 18.4742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.6759 27.8363 37.0013 10.4986 3.83029

CAGE analysis