Hb_003155_060

Information

Type -
Description -
Location Contig3155: 58449-61111
Sequence    

Annotation

kegg
ID pmum:103326132
description uncharacterized LOC103326132
nr
ID XP_009612366.1
description PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
swissprot
ID P63128
description Endogenous retrovirus group K member 9 Pol protein OS=Homo sapiens GN=ERVK-9 PE=3 SV=3
trembl
ID A0A061FQA2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_043787 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003155_060 0.0 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
2 Hb_000576_100 0.0003510554 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_108768_010 0.0048114459 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
4 Hb_007749_030 0.1108253258 - - -
5 Hb_002536_020 0.1330179352 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
6 Hb_003487_010 0.1693873613 - - -
7 Hb_017687_010 0.1703168492 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
8 Hb_002478_050 0.2336037574 - - K(+)/H(+) antiporter, putative [Ricinus communis]
9 Hb_000485_060 0.2336040428 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
10 Hb_001844_010 0.2336109396 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_005781_010 0.233613339 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
12 Hb_076836_010 0.2336143616 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
13 Hb_006094_010 0.2336215797 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
14 Hb_177166_010 0.2336448153 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
15 Hb_003828_010 0.2336630952 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
16 Hb_064445_030 0.2336674985 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
17 Hb_024446_010 0.2336883409 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_003504_050 0.2342957014 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
19 Hb_004772_010 0.235046947 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
20 Hb_011206_030 0.2357819589 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_003155_060 Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_003155_060--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_003155_060--Hb_108768_010 Hb_007749_030 Hb_007749_030 Hb_003155_060--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_003155_060--Hb_002536_020 Hb_003487_010 Hb_003487_010 Hb_003155_060--Hb_003487_010 Hb_017687_010 Hb_017687_010 Hb_003155_060--Hb_017687_010 Hb_000576_100--Hb_108768_010 Hb_000576_100--Hb_007749_030 Hb_000576_100--Hb_002536_020 Hb_000576_100--Hb_003487_010 Hb_000576_100--Hb_017687_010 Hb_108768_010--Hb_007749_030 Hb_108768_010--Hb_002536_020 Hb_108768_010--Hb_017687_010 Hb_108768_010--Hb_003487_010 Hb_007749_030--Hb_002536_020 Hb_007749_030--Hb_003487_010 Hb_003607_100 Hb_003607_100 Hb_007749_030--Hb_003607_100 Hb_002536_020--Hb_003607_100 Hb_115572_040 Hb_115572_040 Hb_002536_020--Hb_115572_040 Hb_155403_010 Hb_155403_010 Hb_003487_010--Hb_155403_010 Hb_003487_010--Hb_002536_020 Hb_023161_030 Hb_023161_030 Hb_017687_010--Hb_023161_030 Hb_017687_010--Hb_007749_030 Hb_017687_010--Hb_002536_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.020234 0 0 0.00632855 0.03374

CAGE analysis