Hb_003157_020

Information

Type -
Description -
Location Contig3157: 25312-27942
Sequence    

Annotation

kegg
ID brp:103860066
description uncharacterized LOC103860066
nr
ID XP_010533307.1
description PREDICTED: uncharacterized protein LOC104809111 [Tarenaya hassleriana]
swissprot
ID P14350
description Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2
trembl
ID A0A087HF90
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G041600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003157_020 0.0 - - PREDICTED: uncharacterized protein LOC104809111 [Tarenaya hassleriana]
2 Hb_171685_080 0.1061911418 - - unknown [Allium cepa]
3 Hb_010053_050 0.1083513677 - - hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]
4 Hb_164415_010 0.1095804335 - - conserved hypothetical protein [Ricinus communis]
5 Hb_017415_010 0.1100776058 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
6 Hb_010053_060 0.1159990563 - - ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_000284_050 0.1163127034 - - hypothetical protein L484_026849 [Morus notabilis]
8 Hb_003688_030 0.1258949725 - - NADH dehydrogenase 2-like ORF 180
9 Hb_131816_010 0.1293010861 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
10 Hb_000326_100 0.129768655 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
11 Hb_004987_050 0.1299645512 - - -
12 Hb_005622_090 0.1307569943 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
13 Hb_004161_040 0.1307861849 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
14 Hb_002395_010 0.131169766 - - -
15 Hb_012184_020 0.1320944332 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000959_380 0.1322329243 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
17 Hb_145745_030 0.1329438576 - - BnaC09g26890D [Brassica napus]
18 Hb_003144_020 0.13497531 - - (R)-limonene synthase, putative [Ricinus communis]
19 Hb_005224_020 0.1351578041 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
20 Hb_005054_140 0.13566954 - - PREDICTED: laccase-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_003157_020 Hb_003157_020 Hb_171685_080 Hb_171685_080 Hb_003157_020--Hb_171685_080 Hb_010053_050 Hb_010053_050 Hb_003157_020--Hb_010053_050 Hb_164415_010 Hb_164415_010 Hb_003157_020--Hb_164415_010 Hb_017415_010 Hb_017415_010 Hb_003157_020--Hb_017415_010 Hb_010053_060 Hb_010053_060 Hb_003157_020--Hb_010053_060 Hb_000284_050 Hb_000284_050 Hb_003157_020--Hb_000284_050 Hb_006040_010 Hb_006040_010 Hb_171685_080--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_171685_080--Hb_006040_020 Hb_003688_030 Hb_003688_030 Hb_171685_080--Hb_003688_030 Hb_013420_050 Hb_013420_050 Hb_171685_080--Hb_013420_050 Hb_008085_020 Hb_008085_020 Hb_171685_080--Hb_008085_020 Hb_006040_030 Hb_006040_030 Hb_171685_080--Hb_006040_030 Hb_010053_050--Hb_010053_060 Hb_010053_050--Hb_000284_050 Hb_004161_040 Hb_004161_040 Hb_010053_050--Hb_004161_040 Hb_000938_050 Hb_000938_050 Hb_010053_050--Hb_000938_050 Hb_131816_010 Hb_131816_010 Hb_010053_050--Hb_131816_010 Hb_005622_090 Hb_005622_090 Hb_010053_050--Hb_005622_090 Hb_164415_010--Hb_171685_080 Hb_164415_010--Hb_006040_010 Hb_004987_050 Hb_004987_050 Hb_164415_010--Hb_004987_050 Hb_005054_140 Hb_005054_140 Hb_164415_010--Hb_005054_140 Hb_164415_010--Hb_017415_010 Hb_180367_010 Hb_180367_010 Hb_017415_010--Hb_180367_010 Hb_002149_030 Hb_002149_030 Hb_017415_010--Hb_002149_030 Hb_003567_020 Hb_003567_020 Hb_017415_010--Hb_003567_020 Hb_000248_040 Hb_000248_040 Hb_017415_010--Hb_000248_040 Hb_010053_060--Hb_000284_050 Hb_010053_060--Hb_131816_010 Hb_010053_060--Hb_000938_050 Hb_010053_060--Hb_004161_040 Hb_000959_380 Hb_000959_380 Hb_010053_060--Hb_000959_380 Hb_002041_010 Hb_002041_010 Hb_000284_050--Hb_002041_010 Hb_000284_050--Hb_004161_040 Hb_000497_310 Hb_000497_310 Hb_000284_050--Hb_000497_310 Hb_000284_050--Hb_000938_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0104185 0 0.00623355 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00596968 0.478251

CAGE analysis