Hb_003158_010

Information

Type -
Description -
Location Contig3158: 6611-16992
Sequence    

Annotation

kegg
ID rcu:RCOM_1402550
description Sorting nexin-4, putative
nr
ID KDP45754.1
description hypothetical protein JCGZ_17361 [Jatropha curcas]
swissprot
ID B9DFS6
description Sorting nexin 2B OS=Arabidopsis thaliana GN=SNX2B PE=1 SV=1
trembl
ID A0A067LMW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17361 PE=4 SV=1
Gene Ontology
ID GO:0035091
description sorting nexin 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33287: 6722-16474 , PASA_asmbl_33289: 14972-15083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003158_010 0.0 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
2 Hb_000329_470 0.0450455333 - - ccr4-not transcription complex, putative [Ricinus communis]
3 Hb_167498_010 0.0455760119 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
4 Hb_000225_040 0.048756986 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
5 Hb_002025_020 0.0521848887 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
6 Hb_000011_200 0.0527794541 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
7 Hb_000347_070 0.0581616777 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001638_270 0.05931371 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
9 Hb_004619_030 0.060314911 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
10 Hb_003226_180 0.063287991 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
11 Hb_011671_430 0.0650779873 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
12 Hb_002518_280 0.0660420282 - - phosphate transporter [Manihot esculenta]
13 Hb_007254_070 0.0660476891 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
14 Hb_003058_190 0.0663388686 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
15 Hb_000038_170 0.0668640402 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
16 Hb_000193_190 0.0673713554 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
17 Hb_001409_020 0.0697822908 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
18 Hb_001369_730 0.0701424555 - - F5O11.10, putative isoform 1 [Theobroma cacao]
19 Hb_002835_370 0.0704285036 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
20 Hb_003025_110 0.0712135553 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003158_010 Hb_003158_010 Hb_000329_470 Hb_000329_470 Hb_003158_010--Hb_000329_470 Hb_167498_010 Hb_167498_010 Hb_003158_010--Hb_167498_010 Hb_000225_040 Hb_000225_040 Hb_003158_010--Hb_000225_040 Hb_002025_020 Hb_002025_020 Hb_003158_010--Hb_002025_020 Hb_000011_200 Hb_000011_200 Hb_003158_010--Hb_000011_200 Hb_000347_070 Hb_000347_070 Hb_003158_010--Hb_000347_070 Hb_003226_180 Hb_003226_180 Hb_000329_470--Hb_003226_180 Hb_000329_470--Hb_167498_010 Hb_000329_470--Hb_000225_040 Hb_001369_730 Hb_001369_730 Hb_000329_470--Hb_001369_730 Hb_001579_220 Hb_001579_220 Hb_000329_470--Hb_001579_220 Hb_167498_010--Hb_001369_730 Hb_001409_020 Hb_001409_020 Hb_167498_010--Hb_001409_020 Hb_167498_010--Hb_000225_040 Hb_007254_070 Hb_007254_070 Hb_167498_010--Hb_007254_070 Hb_000225_040--Hb_000011_200 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_002025_020--Hb_000347_070 Hb_009545_100 Hb_009545_100 Hb_002025_020--Hb_009545_100 Hb_002835_370 Hb_002835_370 Hb_002025_020--Hb_002835_370 Hb_004221_020 Hb_004221_020 Hb_002025_020--Hb_004221_020 Hb_000780_230 Hb_000780_230 Hb_002025_020--Hb_000780_230 Hb_000011_200--Hb_000193_190 Hb_004410_030 Hb_004410_030 Hb_000011_200--Hb_004410_030 Hb_006827_020 Hb_006827_020 Hb_000011_200--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000011_200--Hb_007317_110 Hb_000731_270 Hb_000731_270 Hb_000347_070--Hb_000731_270 Hb_004619_030 Hb_004619_030 Hb_000347_070--Hb_004619_030 Hb_002375_010 Hb_002375_010 Hb_000347_070--Hb_002375_010 Hb_003163_020 Hb_003163_020 Hb_000347_070--Hb_003163_020 Hb_000190_120 Hb_000190_120 Hb_000347_070--Hb_000190_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3434 19.3983 11.9657 12.4767 26.9844 22.0368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0225 19.9996 21.3491 22.0033 15.9698

CAGE analysis