Hb_003158_020

Information

Type -
Description -
Location Contig3158: 41660-46624
Sequence    

Annotation

kegg
ID sly:104647507
description uncharacterized LOC104647507
nr
ID XP_010321238.1
description PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID A0A061FHX3
description Uncharacterized protein (Fragment) OS=Theobroma cacao GN=TCM_033266 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003158_020 0.0 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
2 Hb_111347_010 0.2017878746 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
3 Hb_001369_260 0.2716162124 - - aldo-keto reductase, putative [Ricinus communis]
4 Hb_001998_060 0.2816735689 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_039112_010 0.2860761118 - - -
6 Hb_000869_110 0.2863666806 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_002392_050 0.2864019223 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
8 Hb_115720_010 0.2894722388 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
9 Hb_001022_040 0.3010504197 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
10 Hb_031284_050 0.3023564306 - - -
11 Hb_000853_130 0.3079967874 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
12 Hb_034587_030 0.3084052031 - - -
13 Hb_018609_040 0.3099086808 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
14 Hb_000270_800 0.3099600635 - - -
15 Hb_075060_030 0.3100044767 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
16 Hb_003837_020 0.3121234657 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
17 Hb_002903_010 0.3170372329 - - 60S ribosomal protein L37-3 [Morus notabilis]
18 Hb_000504_010 0.3206874583 - - oleosin 18.2 kDa-like [Jatropha curcas]
19 Hb_000077_240 0.3215120263 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
20 Hb_000414_150 0.3220965294 - - mta/sah nucleosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003158_020 Hb_003158_020 Hb_111347_010 Hb_111347_010 Hb_003158_020--Hb_111347_010 Hb_001369_260 Hb_001369_260 Hb_003158_020--Hb_001369_260 Hb_001998_060 Hb_001998_060 Hb_003158_020--Hb_001998_060 Hb_039112_010 Hb_039112_010 Hb_003158_020--Hb_039112_010 Hb_000869_110 Hb_000869_110 Hb_003158_020--Hb_000869_110 Hb_002392_050 Hb_002392_050 Hb_003158_020--Hb_002392_050 Hb_000077_240 Hb_000077_240 Hb_111347_010--Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_111347_010--Hb_003398_030 Hb_001022_040 Hb_001022_040 Hb_111347_010--Hb_001022_040 Hb_128051_010 Hb_128051_010 Hb_111347_010--Hb_128051_010 Hb_000853_130 Hb_000853_130 Hb_111347_010--Hb_000853_130 Hb_003992_110 Hb_003992_110 Hb_001369_260--Hb_003992_110 Hb_092449_010 Hb_092449_010 Hb_001369_260--Hb_092449_010 Hb_012324_020 Hb_012324_020 Hb_001369_260--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_001369_260--Hb_094721_010 Hb_020247_060 Hb_020247_060 Hb_001369_260--Hb_020247_060 Hb_001998_060--Hb_039112_010 Hb_001998_060--Hb_000869_110 Hb_001998_060--Hb_002392_050 Hb_115720_010 Hb_115720_010 Hb_001998_060--Hb_115720_010 Hb_031284_050 Hb_031284_050 Hb_001998_060--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_001998_060--Hb_034587_030 Hb_039112_010--Hb_000869_110 Hb_039112_010--Hb_002392_050 Hb_039112_010--Hb_031284_050 Hb_039112_010--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_039112_010--Hb_018609_040 Hb_000869_110--Hb_002392_050 Hb_000869_110--Hb_031284_050 Hb_000869_110--Hb_034587_030 Hb_000869_110--Hb_018609_040 Hb_002392_050--Hb_031284_050 Hb_002392_050--Hb_034587_030 Hb_002392_050--Hb_018609_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0754658 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10328 0.324667 0 0 0

CAGE analysis