Hb_003159_060

Information

Type -
Description -
Location Contig3159: 127299-127766
Sequence    

Annotation

kegg
ID tcc:TCM_001961
description hypothetical protein
nr
ID XP_007048960.1
description Uncharacterized protein TCM_001961 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DL09
description Uncharacterized protein OS=Theobroma cacao GN=TCM_001961 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003159_060 0.0 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
2 Hb_000345_180 0.0918725919 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001898_170 0.121953587 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001258_070 0.1610640603 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001301_140 0.1793890976 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_000365_150 0.1835148699 - - GTP binding protein, putative [Ricinus communis]
7 Hb_001514_170 0.2388113534 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
8 Hb_007943_170 0.2504007576 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
9 Hb_115832_010 0.2545397586 - - transcription factor, putative [Ricinus communis]
10 Hb_009535_010 0.2680346348 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
11 Hb_001269_120 0.2700895711 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
12 Hb_183671_010 0.2744632399 - - serine carboxypeptidase, putative [Ricinus communis]
13 Hb_002766_070 0.2773983739 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
14 Hb_007617_040 0.2793150856 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
15 Hb_002025_280 0.2801168728 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
16 Hb_085600_010 0.280463383 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
17 Hb_000504_060 0.2805226587 - - Cell division cycle protein cdt2, putative [Ricinus communis]
18 Hb_005306_060 0.2822087046 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
19 Hb_074419_010 0.2825417767 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
20 Hb_046615_040 0.2827398822 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_003159_060 Hb_003159_060 Hb_000345_180 Hb_000345_180 Hb_003159_060--Hb_000345_180 Hb_001898_170 Hb_001898_170 Hb_003159_060--Hb_001898_170 Hb_001258_070 Hb_001258_070 Hb_003159_060--Hb_001258_070 Hb_001301_140 Hb_001301_140 Hb_003159_060--Hb_001301_140 Hb_000365_150 Hb_000365_150 Hb_003159_060--Hb_000365_150 Hb_001514_170 Hb_001514_170 Hb_003159_060--Hb_001514_170 Hb_000345_180--Hb_001301_140 Hb_000345_180--Hb_000365_150 Hb_000345_180--Hb_001898_170 Hb_007943_170 Hb_007943_170 Hb_000345_180--Hb_007943_170 Hb_000345_180--Hb_001514_170 Hb_001898_170--Hb_001258_070 Hb_001898_170--Hb_000365_150 Hb_001898_170--Hb_001301_140 Hb_183671_010 Hb_183671_010 Hb_001898_170--Hb_183671_010 Hb_001258_070--Hb_000365_150 Hb_101376_010 Hb_101376_010 Hb_001258_070--Hb_101376_010 Hb_001258_070--Hb_000345_180 Hb_007113_030 Hb_007113_030 Hb_001258_070--Hb_007113_030 Hb_001301_140--Hb_007943_170 Hb_001488_080 Hb_001488_080 Hb_001301_140--Hb_001488_080 Hb_001301_140--Hb_000365_150 Hb_007558_110 Hb_007558_110 Hb_001301_140--Hb_007558_110 Hb_000365_150--Hb_007943_170 Hb_000438_030 Hb_000438_030 Hb_000365_150--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_000365_150--Hb_147060_010 Hb_005332_030 Hb_005332_030 Hb_001514_170--Hb_005332_030 Hb_001699_270 Hb_001699_270 Hb_001514_170--Hb_001699_270 Hb_002686_320 Hb_002686_320 Hb_001514_170--Hb_002686_320 Hb_004055_090 Hb_004055_090 Hb_001514_170--Hb_004055_090 Hb_000522_160 Hb_000522_160 Hb_001514_170--Hb_000522_160 Hb_000977_190 Hb_000977_190 Hb_001514_170--Hb_000977_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14606 0 0.36233 0.399496 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.126437 0

CAGE analysis