Hb_003160_070

Information

Type -
Description -
Location Contig3160: 76267-82243
Sequence    

Annotation

kegg
ID rcu:RCOM_0926490
description hypothetical protein
nr
ID XP_012078661.1
description PREDICTED: VIN3-like protein 1 [Jatropha curcas]
swissprot
ID Q9LHF5
description VIN3-like protein 1 OS=Arabidopsis thaliana GN=VIL1 PE=1 SV=1
trembl
ID A0A067KJ81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13235 PE=4 SV=1
Gene Ontology
ID GO:0005677
description vin3-like protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33314: 76913-77289 , PASA_asmbl_33315: 76305-82291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003160_070 0.0 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
2 Hb_001160_110 0.0843552565 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
3 Hb_005665_090 0.1075914267 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
4 Hb_029695_070 0.1087888965 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
5 Hb_003640_050 0.1157864636 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_012779_080 0.1178729569 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
7 Hb_000792_050 0.1213330747 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_003687_080 0.1221122963 - - PREDICTED: casein kinase I-like [Jatropha curcas]
9 Hb_000645_180 0.122420992 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
10 Hb_006816_190 0.1228685497 - - calreticulin family protein [Populus trichocarpa]
11 Hb_002044_020 0.123577748 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
12 Hb_070624_010 0.1264898135 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
13 Hb_001623_490 0.1267550928 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
14 Hb_001663_130 0.1270930222 - - acyl-CoA thioesterase, putative [Ricinus communis]
15 Hb_003397_030 0.127460372 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
16 Hb_004013_030 0.1286876123 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
17 Hb_000094_100 0.1305319465 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
18 Hb_004517_030 0.1305552979 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000035_210 0.1316520419 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
20 Hb_000996_080 0.1319413802 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]

Gene co-expression network

sample Hb_003160_070 Hb_003160_070 Hb_001160_110 Hb_001160_110 Hb_003160_070--Hb_001160_110 Hb_005665_090 Hb_005665_090 Hb_003160_070--Hb_005665_090 Hb_029695_070 Hb_029695_070 Hb_003160_070--Hb_029695_070 Hb_003640_050 Hb_003640_050 Hb_003160_070--Hb_003640_050 Hb_012779_080 Hb_012779_080 Hb_003160_070--Hb_012779_080 Hb_000792_050 Hb_000792_050 Hb_003160_070--Hb_000792_050 Hb_003687_080 Hb_003687_080 Hb_001160_110--Hb_003687_080 Hb_001663_130 Hb_001663_130 Hb_001160_110--Hb_001663_130 Hb_002026_090 Hb_002026_090 Hb_001160_110--Hb_002026_090 Hb_000032_410 Hb_000032_410 Hb_001160_110--Hb_000032_410 Hb_004158_050 Hb_004158_050 Hb_001160_110--Hb_004158_050 Hb_005665_090--Hb_012779_080 Hb_009288_040 Hb_009288_040 Hb_005665_090--Hb_009288_040 Hb_001623_490 Hb_001623_490 Hb_005665_090--Hb_001623_490 Hb_000320_190 Hb_000320_190 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_010620_050 Hb_010620_050 Hb_005665_090--Hb_010620_050 Hb_002044_020 Hb_002044_020 Hb_029695_070--Hb_002044_020 Hb_070624_010 Hb_070624_010 Hb_029695_070--Hb_070624_010 Hb_000265_070 Hb_000265_070 Hb_029695_070--Hb_000265_070 Hb_029695_070--Hb_000645_180 Hb_029695_070--Hb_005665_090 Hb_000076_250 Hb_000076_250 Hb_003640_050--Hb_000076_250 Hb_000996_080 Hb_000996_080 Hb_003640_050--Hb_000996_080 Hb_003640_050--Hb_005665_090 Hb_005074_050 Hb_005074_050 Hb_003640_050--Hb_005074_050 Hb_001141_050 Hb_001141_050 Hb_003640_050--Hb_001141_050 Hb_012779_080--Hb_000320_190 Hb_012779_080--Hb_001623_490 Hb_002915_010 Hb_002915_010 Hb_012779_080--Hb_002915_010 Hb_012779_080--Hb_010620_050 Hb_012779_080--Hb_009288_040 Hb_001922_110 Hb_001922_110 Hb_000792_050--Hb_001922_110 Hb_000227_400 Hb_000227_400 Hb_000792_050--Hb_000227_400 Hb_000792_050--Hb_001141_050 Hb_003397_030 Hb_003397_030 Hb_000792_050--Hb_003397_030 Hb_000792_050--Hb_000996_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.51582 4.03267 29.5772 13.7855 3.23825 3.91689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.5241 1.7714 3.29144 5.51621 14.1363

CAGE analysis