Hb_003162_060

Information

Type -
Description -
Location Contig3162: 84352-86519
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01300g
description hypothetical protein
nr
ID XP_012065942.1
description PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
swissprot
ID Q9FPT1
description Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2
trembl
ID A0A067LF79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22127 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003162_060 0.0 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
2 Hb_020956_030 0.0316082777 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
3 Hb_086300_010 0.0733053838 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_005532_030 0.0813825961 - - DNA binding protein, putative [Ricinus communis]
5 Hb_026549_060 0.0843146415 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
6 Hb_001541_200 0.0852937746 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
7 Hb_001141_100 0.0875687608 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
8 Hb_008195_090 0.0880551843 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001433_090 0.0887332216 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
10 Hb_028491_010 0.0915209418 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
11 Hb_033681_030 0.0922249038 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
12 Hb_005010_030 0.0941784214 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
13 Hb_001657_020 0.0953972929 - - heat shock family protein [Populus trichocarpa]
14 Hb_001047_210 0.0963948171 - - PSI reaction center subunit II [Citrus sinensis]
15 Hb_001500_130 0.0982356028 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
16 Hb_004563_010 0.0987222956 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_002477_190 0.0997438778 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
18 Hb_006291_050 0.1001271603 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_029879_150 0.1004459829 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
20 Hb_000002_110 0.1006370711 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]

Gene co-expression network

sample Hb_003162_060 Hb_003162_060 Hb_020956_030 Hb_020956_030 Hb_003162_060--Hb_020956_030 Hb_086300_010 Hb_086300_010 Hb_003162_060--Hb_086300_010 Hb_005532_030 Hb_005532_030 Hb_003162_060--Hb_005532_030 Hb_026549_060 Hb_026549_060 Hb_003162_060--Hb_026549_060 Hb_001541_200 Hb_001541_200 Hb_003162_060--Hb_001541_200 Hb_001141_100 Hb_001141_100 Hb_003162_060--Hb_001141_100 Hb_020956_030--Hb_001541_200 Hb_001433_090 Hb_001433_090 Hb_020956_030--Hb_001433_090 Hb_020956_030--Hb_026549_060 Hb_020956_030--Hb_086300_010 Hb_001657_020 Hb_001657_020 Hb_020956_030--Hb_001657_020 Hb_147028_010 Hb_147028_010 Hb_086300_010--Hb_147028_010 Hb_028491_010 Hb_028491_010 Hb_086300_010--Hb_028491_010 Hb_086300_010--Hb_005532_030 Hb_033681_030 Hb_033681_030 Hb_086300_010--Hb_033681_030 Hb_002374_180 Hb_002374_180 Hb_005532_030--Hb_002374_180 Hb_002336_050 Hb_002336_050 Hb_005532_030--Hb_002336_050 Hb_002600_170 Hb_002600_170 Hb_005532_030--Hb_002600_170 Hb_006831_090 Hb_006831_090 Hb_005532_030--Hb_006831_090 Hb_000329_780 Hb_000329_780 Hb_005532_030--Hb_000329_780 Hb_026549_060--Hb_001433_090 Hb_026549_060--Hb_001541_200 Hb_000958_090 Hb_000958_090 Hb_026549_060--Hb_000958_090 Hb_005183_050 Hb_005183_050 Hb_026549_060--Hb_005183_050 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030 Hb_001541_200--Hb_001657_020 Hb_001541_200--Hb_001433_090 Hb_001541_200--Hb_005183_050 Hb_001141_100--Hb_028491_010 Hb_008847_050 Hb_008847_050 Hb_001141_100--Hb_008847_050 Hb_001141_100--Hb_147028_010 Hb_004607_110 Hb_004607_110 Hb_001141_100--Hb_004607_110 Hb_001277_130 Hb_001277_130 Hb_001141_100--Hb_001277_130 Hb_009193_070 Hb_009193_070 Hb_001141_100--Hb_009193_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0140943 0.266369 1.75881 2.85776 0.0132001 0.0141826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0474258 0.0807104 5.01641

CAGE analysis