Hb_003163_010

Information

Type -
Description -
Location Contig3163: 5418-5861
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02920g
description POPTRDRAFT_569621; hypothetical protein
nr
ID XP_002317808.2
description hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I223
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02920g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33316: 5278-5815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003163_010 0.0 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
2 Hb_172426_070 0.0447706375 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
3 Hb_006831_090 0.0690172277 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
4 Hb_003911_050 0.074376885 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
5 Hb_002600_170 0.0750797903 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008536_020 0.077992887 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
7 Hb_001491_070 0.0785971002 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
8 Hb_004032_280 0.0812253632 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
9 Hb_005018_010 0.0833172312 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
10 Hb_166718_010 0.0886368567 - - heat-shock protein, putative [Ricinus communis]
11 Hb_000329_780 0.0912285245 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
12 Hb_002740_050 0.0915473677 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
13 Hb_001735_040 0.0920041386 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
14 Hb_002374_180 0.0934679621 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
15 Hb_004204_060 0.0946352382 transcription factor TF Family: NAC NAC transcription factor 058, partial [Jatropha curcas]
16 Hb_000000_390 0.0990066039 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
17 Hb_003855_060 0.1001872935 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
18 Hb_000538_090 0.1013853291 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
19 Hb_005337_100 0.1023903841 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
20 Hb_007850_020 0.1042287065 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003163_010 Hb_003163_010 Hb_172426_070 Hb_172426_070 Hb_003163_010--Hb_172426_070 Hb_006831_090 Hb_006831_090 Hb_003163_010--Hb_006831_090 Hb_003911_050 Hb_003911_050 Hb_003163_010--Hb_003911_050 Hb_002600_170 Hb_002600_170 Hb_003163_010--Hb_002600_170 Hb_008536_020 Hb_008536_020 Hb_003163_010--Hb_008536_020 Hb_001491_070 Hb_001491_070 Hb_003163_010--Hb_001491_070 Hb_172426_070--Hb_006831_090 Hb_172426_070--Hb_001491_070 Hb_172426_070--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_172426_070--Hb_004032_280 Hb_172426_070--Hb_008536_020 Hb_000329_780 Hb_000329_780 Hb_006831_090--Hb_000329_780 Hb_006831_090--Hb_002600_170 Hb_006831_090--Hb_004032_280 Hb_002374_180 Hb_002374_180 Hb_006831_090--Hb_002374_180 Hb_006831_090--Hb_008536_020 Hb_007904_150 Hb_007904_150 Hb_003911_050--Hb_007904_150 Hb_003911_050--Hb_172426_070 Hb_007850_020 Hb_007850_020 Hb_003911_050--Hb_007850_020 Hb_012035_010 Hb_012035_010 Hb_003911_050--Hb_012035_010 Hb_000941_110 Hb_000941_110 Hb_003911_050--Hb_000941_110 Hb_002600_170--Hb_002374_180 Hb_002600_170--Hb_008536_020 Hb_002600_170--Hb_000329_780 Hb_002600_170--Hb_004032_280 Hb_005532_030 Hb_005532_030 Hb_002600_170--Hb_005532_030 Hb_008536_020--Hb_000329_780 Hb_000520_040 Hb_000520_040 Hb_008536_020--Hb_000520_040 Hb_008536_020--Hb_004032_280 Hb_008536_020--Hb_002374_180 Hb_005018_010 Hb_005018_010 Hb_001491_070--Hb_005018_010 Hb_002001_030 Hb_002001_030 Hb_001491_070--Hb_002001_030 Hb_000424_130 Hb_000424_130 Hb_001491_070--Hb_000424_130 Hb_000139_360 Hb_000139_360 Hb_001491_070--Hb_000139_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.133649 5.71611 6.25745 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.489526 8.20104

CAGE analysis