Hb_003163_020

Information

Type -
Description -
Location Contig3163: 13141-20114
Sequence    

Annotation

kegg
ID rcu:RCOM_0444630
description RNA-binding protein, putative
nr
ID XP_012088645.1
description PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SG10
description Polyadenylate-binding protein-interacting protein 10 OS=Arabidopsis thaliana GN=CID10 PE=2 SV=1
trembl
ID A0A067JW96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00145 PE=4 SV=1
Gene Ontology
ID GO:0000166
description ctc-interacting domain 11 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33318: 12888-20116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003163_020 0.0 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
2 Hb_011930_160 0.0425196076 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
3 Hb_004619_030 0.047163013 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
4 Hb_000347_070 0.0560135408 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000617_180 0.0660038205 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
6 Hb_000317_470 0.0664804825 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
7 Hb_000011_200 0.0672739942 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
8 Hb_032202_200 0.0676438971 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_004414_060 0.0683937176 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
10 Hb_002375_010 0.0693035996 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
11 Hb_000462_060 0.0724486952 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
12 Hb_000193_190 0.0726390601 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
13 Hb_007576_110 0.0730509213 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
14 Hb_003025_110 0.0747979672 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
15 Hb_000789_310 0.0760930125 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
16 Hb_001946_010 0.0764041792 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_006827_020 0.0774346526 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004410_030 0.0781228867 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_001357_250 0.078360664 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
20 Hb_002025_020 0.0788454811 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]

Gene co-expression network

sample Hb_003163_020 Hb_003163_020 Hb_011930_160 Hb_011930_160 Hb_003163_020--Hb_011930_160 Hb_004619_030 Hb_004619_030 Hb_003163_020--Hb_004619_030 Hb_000347_070 Hb_000347_070 Hb_003163_020--Hb_000347_070 Hb_000617_180 Hb_000617_180 Hb_003163_020--Hb_000617_180 Hb_000317_470 Hb_000317_470 Hb_003163_020--Hb_000317_470 Hb_000011_200 Hb_000011_200 Hb_003163_020--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_011930_160--Hb_001946_010 Hb_011930_160--Hb_004619_030 Hb_003025_110 Hb_003025_110 Hb_011930_160--Hb_003025_110 Hb_000193_190 Hb_000193_190 Hb_011930_160--Hb_000193_190 Hb_103012_010 Hb_103012_010 Hb_011930_160--Hb_103012_010 Hb_004619_030--Hb_000347_070 Hb_004619_030--Hb_000011_200 Hb_004410_030 Hb_004410_030 Hb_004619_030--Hb_004410_030 Hb_004619_030--Hb_000617_180 Hb_002025_020 Hb_002025_020 Hb_000347_070--Hb_002025_020 Hb_000731_270 Hb_000731_270 Hb_000347_070--Hb_000731_270 Hb_002375_010 Hb_002375_010 Hb_000347_070--Hb_002375_010 Hb_000190_120 Hb_000190_120 Hb_000347_070--Hb_000190_120 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000617_180--Hb_000347_070 Hb_000617_180--Hb_002375_010 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290 Hb_123915_040 Hb_123915_040 Hb_000317_470--Hb_123915_040 Hb_032986_010 Hb_032986_010 Hb_000317_470--Hb_032986_010 Hb_000522_170 Hb_000522_170 Hb_000317_470--Hb_000522_170 Hb_007416_300 Hb_007416_300 Hb_000317_470--Hb_007416_300 Hb_002272_130 Hb_002272_130 Hb_000317_470--Hb_002272_130 Hb_000225_040 Hb_000225_040 Hb_000011_200--Hb_000225_040 Hb_000011_200--Hb_000193_190 Hb_000011_200--Hb_004410_030 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_006827_020 Hb_006827_020 Hb_000011_200--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000011_200--Hb_007317_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.0879 30.7676 37.3012 35.0476 60.2211 47.8634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.778 30.5935 48.5831 49.4316 29.1283

CAGE analysis