Hb_003164_010

Information

Type -
Description -
Location Contig3164: 22867-23472
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_002533395.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T576
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0446110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003164_010 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_001728_120 0.1784426266 - - hypothetical protein POPTR_0001s15540g, partial [Populus trichocarpa]
3 Hb_001587_170 0.2155025833 - - hypothetical protein B456_010G223200, partial [Gossypium raimondii]
4 Hb_000367_250 0.2227573301 - - unnamed protein product [Vitis vinifera]
5 Hb_004007_140 0.2278762033 - - PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]
6 Hb_002045_080 0.2311145026 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
7 Hb_000856_270 0.2347260558 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
8 Hb_012092_020 0.2359872049 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_059554_010 0.2521610308 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
10 Hb_001504_210 0.2628496587 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
11 Hb_003813_180 0.2682527548 - - sterol desaturase, putative [Ricinus communis]
12 Hb_000847_130 0.2684041624 - - PREDICTED: fimbrin-2 [Jatropha curcas]
13 Hb_003121_010 0.2707951184 - - hypothetical protein POPTR_0018s09720g [Populus trichocarpa]
14 Hb_001488_190 0.2760870813 - - alpha-amylase, putative [Ricinus communis]
15 Hb_001300_250 0.277405608 - - hypothetical protein JCGZ_22020 [Jatropha curcas]
16 Hb_001491_020 0.2826026536 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_001279_240 0.2830348764 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105633500 [Jatropha curcas]
18 Hb_008279_030 0.2855711599 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001817_040 0.2878550873 - - myosin XI, putative [Ricinus communis]
20 Hb_001105_120 0.2910329297 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003164_010 Hb_003164_010 Hb_001728_120 Hb_001728_120 Hb_003164_010--Hb_001728_120 Hb_001587_170 Hb_001587_170 Hb_003164_010--Hb_001587_170 Hb_000367_250 Hb_000367_250 Hb_003164_010--Hb_000367_250 Hb_004007_140 Hb_004007_140 Hb_003164_010--Hb_004007_140 Hb_002045_080 Hb_002045_080 Hb_003164_010--Hb_002045_080 Hb_000856_270 Hb_000856_270 Hb_003164_010--Hb_000856_270 Hb_001300_250 Hb_001300_250 Hb_001728_120--Hb_001300_250 Hb_001728_120--Hb_002045_080 Hb_003073_090 Hb_003073_090 Hb_001728_120--Hb_003073_090 Hb_000834_070 Hb_000834_070 Hb_001728_120--Hb_000834_070 Hb_001728_120--Hb_001587_170 Hb_001587_170--Hb_000367_250 Hb_001587_170--Hb_001300_250 Hb_001959_090 Hb_001959_090 Hb_001587_170--Hb_001959_090 Hb_000454_040 Hb_000454_040 Hb_001587_170--Hb_000454_040 Hb_000120_630 Hb_000120_630 Hb_000367_250--Hb_000120_630 Hb_000367_250--Hb_000856_270 Hb_000367_250--Hb_004007_140 Hb_008279_030 Hb_008279_030 Hb_000367_250--Hb_008279_030 Hb_001504_210 Hb_001504_210 Hb_004007_140--Hb_001504_210 Hb_001817_040 Hb_001817_040 Hb_004007_140--Hb_001817_040 Hb_000438_160 Hb_000438_160 Hb_004007_140--Hb_000438_160 Hb_001140_190 Hb_001140_190 Hb_004007_140--Hb_001140_190 Hb_000847_130 Hb_000847_130 Hb_004007_140--Hb_000847_130 Hb_001491_020 Hb_001491_020 Hb_004007_140--Hb_001491_020 Hb_059554_010 Hb_059554_010 Hb_002045_080--Hb_059554_010 Hb_001488_190 Hb_001488_190 Hb_002045_080--Hb_001488_190 Hb_002173_050 Hb_002173_050 Hb_002045_080--Hb_002173_050 Hb_012090_030 Hb_012090_030 Hb_002045_080--Hb_012090_030 Hb_000856_270--Hb_001140_190 Hb_000243_230 Hb_000243_230 Hb_000856_270--Hb_000243_230 Hb_000071_060 Hb_000071_060 Hb_000856_270--Hb_000071_060 Hb_000856_270--Hb_000438_160 Hb_000856_270--Hb_004007_140 Hb_000856_270--Hb_001491_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.271332 0.165747 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.136963 0 0.151568

CAGE analysis