Hb_003168_110

Information

Type transcription factor
Description TF Family: SWI/SNF-SWI3
Location Contig3168: 85153-87597
Sequence    

Annotation

kegg
ID pop:POPTR_0002s01450g
description POPTRDRAFT_550801; amine oxidase family protein
nr
ID XP_012085923.1
description PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
swissprot
ID Q8VXV7
description Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1
trembl
ID A0A067K3D0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22284 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lysine-specific histone demethylase 1 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003168_110 0.0 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
2 Hb_001329_140 0.0538002979 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
3 Hb_000684_250 0.0564118499 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
4 Hb_003494_020 0.0647056491 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
5 Hb_000590_050 0.0681135172 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
6 Hb_000009_560 0.0683254693 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
7 Hb_000890_060 0.0683869231 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
8 Hb_003504_030 0.069729816 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
9 Hb_001004_060 0.0704299616 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
10 Hb_004672_040 0.0705357274 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
11 Hb_000037_190 0.0710610072 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
12 Hb_000174_270 0.0731184946 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
13 Hb_006915_030 0.0733730423 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
14 Hb_001635_120 0.0749016541 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
15 Hb_000603_280 0.0761217592 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
16 Hb_000388_090 0.0772146123 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
17 Hb_000327_270 0.0772501487 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
18 Hb_000017_220 0.0783312752 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
19 Hb_001227_060 0.0784686631 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Jatropha curcas]
20 Hb_001799_180 0.0807395698 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]

Gene co-expression network

sample Hb_003168_110 Hb_003168_110 Hb_001329_140 Hb_001329_140 Hb_003168_110--Hb_001329_140 Hb_000684_250 Hb_000684_250 Hb_003168_110--Hb_000684_250 Hb_003494_020 Hb_003494_020 Hb_003168_110--Hb_003494_020 Hb_000590_050 Hb_000590_050 Hb_003168_110--Hb_000590_050 Hb_000009_560 Hb_000009_560 Hb_003168_110--Hb_000009_560 Hb_000890_060 Hb_000890_060 Hb_003168_110--Hb_000890_060 Hb_001329_140--Hb_000684_250 Hb_000803_260 Hb_000803_260 Hb_001329_140--Hb_000803_260 Hb_000037_190 Hb_000037_190 Hb_001329_140--Hb_000037_190 Hb_000457_260 Hb_000457_260 Hb_001329_140--Hb_000457_260 Hb_001329_140--Hb_000590_050 Hb_002235_300 Hb_002235_300 Hb_000684_250--Hb_002235_300 Hb_009767_080 Hb_009767_080 Hb_000684_250--Hb_009767_080 Hb_002253_080 Hb_002253_080 Hb_000684_250--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_000684_250--Hb_002267_140 Hb_000174_270 Hb_000174_270 Hb_003494_020--Hb_000174_270 Hb_002234_170 Hb_002234_170 Hb_003494_020--Hb_002234_170 Hb_000028_130 Hb_000028_130 Hb_003494_020--Hb_000028_130 Hb_000258_160 Hb_000258_160 Hb_003494_020--Hb_000258_160 Hb_062226_070 Hb_062226_070 Hb_003494_020--Hb_062226_070 Hb_002818_030 Hb_002818_030 Hb_003494_020--Hb_002818_030 Hb_000327_270 Hb_000327_270 Hb_000590_050--Hb_000327_270 Hb_020378_030 Hb_020378_030 Hb_000590_050--Hb_020378_030 Hb_000590_050--Hb_000890_060 Hb_009270_020 Hb_009270_020 Hb_000590_050--Hb_009270_020 Hb_000592_030 Hb_000592_030 Hb_000590_050--Hb_000592_030 Hb_001004_060 Hb_001004_060 Hb_000590_050--Hb_001004_060 Hb_000192_080 Hb_000192_080 Hb_000009_560--Hb_000192_080 Hb_001377_490 Hb_001377_490 Hb_000009_560--Hb_001377_490 Hb_015934_040 Hb_015934_040 Hb_000009_560--Hb_015934_040 Hb_001538_130 Hb_001538_130 Hb_000009_560--Hb_001538_130 Hb_000083_120 Hb_000083_120 Hb_000009_560--Hb_000083_120 Hb_000008_290 Hb_000008_290 Hb_000890_060--Hb_000008_290 Hb_000890_060--Hb_000327_270 Hb_001814_030 Hb_001814_030 Hb_000890_060--Hb_001814_030 Hb_007426_110 Hb_007426_110 Hb_000890_060--Hb_007426_110 Hb_000890_060--Hb_020378_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.50776 8.1647 4.69765 7.26968 5.28585 9.04576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.1044 4.88539 9.44472 6.54506 8.65434

CAGE analysis