Hb_003171_030

Information

Type -
Description -
Location Contig3171: 15777-20389
Sequence    

Annotation

kegg
ID rcu:RCOM_0845250
description Protein grpE, putative (EC:5.1.3.1)
nr
ID XP_012070349.1
description PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
swissprot
ID Q8DJB3
description Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1
trembl
ID A0A067L6A9
description GrpE protein homolog OS=Jatropha curcas GN=JCGZ_02644 PE=3 SV=1
Gene Ontology
ID GO:0000774
description grpe protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33427: 15843-20378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003171_030 0.0 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
2 Hb_009687_020 0.0649238926 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
3 Hb_006198_130 0.0706499773 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
4 Hb_000059_270 0.0949316017 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
5 Hb_000816_200 0.0993115043 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
6 Hb_001723_030 0.0998694931 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
7 Hb_001269_500 0.1014747554 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
8 Hb_010128_020 0.1020742686 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
9 Hb_003029_020 0.1026638036 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
10 Hb_000579_040 0.1056447862 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
11 Hb_126917_010 0.1060828573 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
12 Hb_006829_080 0.1071120004 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
13 Hb_000300_020 0.1073371315 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
14 Hb_025194_090 0.1087299152 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
15 Hb_000548_060 0.1089373767 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
16 Hb_014361_110 0.109976551 - - RNA binding protein, putative [Ricinus communis]
17 Hb_001959_060 0.1103829799 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
18 Hb_002075_030 0.1124439951 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
19 Hb_000684_430 0.1127061301 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
20 Hb_189003_060 0.1128872313 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003171_030 Hb_003171_030 Hb_009687_020 Hb_009687_020 Hb_003171_030--Hb_009687_020 Hb_006198_130 Hb_006198_130 Hb_003171_030--Hb_006198_130 Hb_000059_270 Hb_000059_270 Hb_003171_030--Hb_000059_270 Hb_000816_200 Hb_000816_200 Hb_003171_030--Hb_000816_200 Hb_001723_030 Hb_001723_030 Hb_003171_030--Hb_001723_030 Hb_001269_500 Hb_001269_500 Hb_003171_030--Hb_001269_500 Hb_009687_020--Hb_006198_130 Hb_158092_100 Hb_158092_100 Hb_009687_020--Hb_158092_100 Hb_004055_160 Hb_004055_160 Hb_009687_020--Hb_004055_160 Hb_009687_020--Hb_001269_500 Hb_000473_050 Hb_000473_050 Hb_009687_020--Hb_000473_050 Hb_006198_130--Hb_000059_270 Hb_006198_130--Hb_001269_500 Hb_163950_070 Hb_163950_070 Hb_006198_130--Hb_163950_070 Hb_001220_050 Hb_001220_050 Hb_006198_130--Hb_001220_050 Hb_000059_270--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_000059_270--Hb_016461_030 Hb_000059_270--Hb_009687_020 Hb_000345_370 Hb_000345_370 Hb_000059_270--Hb_000345_370 Hb_000816_200--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310 Hb_002217_140 Hb_002217_140 Hb_001723_030--Hb_002217_140 Hb_000803_240 Hb_000803_240 Hb_001723_030--Hb_000803_240 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_000684_430 Hb_000684_430 Hb_001723_030--Hb_000684_430 Hb_001649_030 Hb_001649_030 Hb_001269_500--Hb_001649_030 Hb_000336_200 Hb_000336_200 Hb_001269_500--Hb_000336_200 Hb_000665_270 Hb_000665_270 Hb_001269_500--Hb_000665_270 Hb_000264_280 Hb_000264_280 Hb_001269_500--Hb_000264_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3312 17.2267 65.8169 39.4075 21.949 13.219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2144 27.9864 12.0674 20.2619 126.846

CAGE analysis