Hb_003171_040

Information

Type -
Description -
Location Contig3171: 42641-45367
Sequence    

Annotation

kegg
ID rcu:RCOM_0845260
description multidrug resistance pump, putative
nr
ID XP_002530955.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9SY86
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0845260 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33428: 38575-45291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003171_040 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_000026_060 0.0891741278 - - beta-1,3-glucanase [Manihot esculenta]
3 Hb_004146_030 0.095381091 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_123689_010 0.0953918311 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
5 Hb_001579_050 0.0981892401 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_004242_200 0.1007519249 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
7 Hb_001691_180 0.103652045 - - phosphoglycerate mutase, putative [Ricinus communis]
8 Hb_007426_070 0.1059621715 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
9 Hb_080791_010 0.1062554042 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
10 Hb_004871_030 0.1063214245 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000694_080 0.1063750286 - - phosphoribulose kinase, putative [Ricinus communis]
12 Hb_002333_040 0.1078956751 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
13 Hb_000017_210 0.1090659208 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
14 Hb_075050_010 0.1095651036 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_139365_010 0.1105170402 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
16 Hb_004459_050 0.1108387502 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000482_030 0.1116515731 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
18 Hb_000107_540 0.1135062489 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
19 Hb_001300_240 0.1143513105 - - shikimate dehydrogenase, putative [Ricinus communis]
20 Hb_015807_020 0.1145422689 - - gibberellin 20-oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003171_040 Hb_003171_040 Hb_000026_060 Hb_000026_060 Hb_003171_040--Hb_000026_060 Hb_004146_030 Hb_004146_030 Hb_003171_040--Hb_004146_030 Hb_123689_010 Hb_123689_010 Hb_003171_040--Hb_123689_010 Hb_001579_050 Hb_001579_050 Hb_003171_040--Hb_001579_050 Hb_004242_200 Hb_004242_200 Hb_003171_040--Hb_004242_200 Hb_001691_180 Hb_001691_180 Hb_003171_040--Hb_001691_180 Hb_080791_010 Hb_080791_010 Hb_000026_060--Hb_080791_010 Hb_000026_060--Hb_004146_030 Hb_000858_050 Hb_000858_050 Hb_000026_060--Hb_000858_050 Hb_015817_010 Hb_015817_010 Hb_000026_060--Hb_015817_010 Hb_007426_070 Hb_007426_070 Hb_000026_060--Hb_007426_070 Hb_004146_030--Hb_007426_070 Hb_000017_210 Hb_000017_210 Hb_004146_030--Hb_000017_210 Hb_000483_440 Hb_000483_440 Hb_004146_030--Hb_000483_440 Hb_004146_030--Hb_000858_050 Hb_004146_030--Hb_001579_050 Hb_029622_060 Hb_029622_060 Hb_123689_010--Hb_029622_060 Hb_002534_090 Hb_002534_090 Hb_123689_010--Hb_002534_090 Hb_000009_470 Hb_000009_470 Hb_123689_010--Hb_000009_470 Hb_011344_030 Hb_011344_030 Hb_123689_010--Hb_011344_030 Hb_007044_020 Hb_007044_020 Hb_123689_010--Hb_007044_020 Hb_001269_480 Hb_001269_480 Hb_123689_010--Hb_001269_480 Hb_001517_060 Hb_001517_060 Hb_001579_050--Hb_001517_060 Hb_015807_020 Hb_015807_020 Hb_001579_050--Hb_015807_020 Hb_001289_050 Hb_001289_050 Hb_001579_050--Hb_001289_050 Hb_000139_030 Hb_000139_030 Hb_001579_050--Hb_000139_030 Hb_000081_110 Hb_000081_110 Hb_001579_050--Hb_000081_110 Hb_001579_050--Hb_002534_090 Hb_010381_080 Hb_010381_080 Hb_004242_200--Hb_010381_080 Hb_001300_240 Hb_001300_240 Hb_004242_200--Hb_001300_240 Hb_114893_010 Hb_114893_010 Hb_004242_200--Hb_114893_010 Hb_006147_020 Hb_006147_020 Hb_004242_200--Hb_006147_020 Hb_043935_010 Hb_043935_010 Hb_004242_200--Hb_043935_010 Hb_004242_200--Hb_004146_030 Hb_000076_070 Hb_000076_070 Hb_001691_180--Hb_000076_070 Hb_001517_010 Hb_001517_010 Hb_001691_180--Hb_001517_010 Hb_001691_180--Hb_123689_010 Hb_009771_080 Hb_009771_080 Hb_001691_180--Hb_009771_080 Hb_000107_540 Hb_000107_540 Hb_001691_180--Hb_000107_540 Hb_028960_010 Hb_028960_010 Hb_001691_180--Hb_028960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142068 2.92215 47.8551 20.7707 0.0373794 0.0651321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133778 0.438586 1.96338 8.78635 157.882

CAGE analysis