Hb_003175_010

Information

Type -
Description -
Location Contig3175: 4112-8388
Sequence    

Annotation

kegg
ID pop:POPTR_0004s00660g
description hypothetical protein
nr
ID XP_012091290.1
description PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
swissprot
ID B6IRQ7
description 50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplD PE=3 SV=1
trembl
ID A0A067JL41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21171 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33437: 4196-8381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003175_010 0.0 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
2 Hb_000808_270 0.0478062455 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
3 Hb_000926_280 0.0491648005 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
4 Hb_019280_040 0.0519817314 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000030_300 0.0542499648 - - Thioredoxin, putative [Ricinus communis]
6 Hb_003766_040 0.0557864693 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_048937_040 0.0576022189 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
8 Hb_004109_090 0.0584383253 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_010457_030 0.0593632448 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
10 Hb_003417_020 0.0593850656 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
11 Hb_000170_210 0.0601956348 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000010_330 0.0622819239 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
13 Hb_000395_170 0.0629940659 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
14 Hb_009557_070 0.0656802808 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000451_010 0.0675190284 - - secretory carrier membrane protein, putative [Ricinus communis]
16 Hb_006185_050 0.0678254604 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
17 Hb_007317_110 0.0693691835 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
18 Hb_007416_280 0.0713868525 - - conserved hypothetical protein [Ricinus communis]
19 Hb_143629_210 0.0715827666 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
20 Hb_001305_010 0.0717157871 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003175_010 Hb_003175_010 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_003175_010--Hb_000926_280 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_048937_040 Hb_048937_040 Hb_003175_010--Hb_048937_040 Hb_006827_020 Hb_006827_020 Hb_000808_270--Hb_006827_020 Hb_001677_210 Hb_001677_210 Hb_000808_270--Hb_001677_210 Hb_007317_110 Hb_007317_110 Hb_000808_270--Hb_007317_110 Hb_143629_210 Hb_143629_210 Hb_000808_270--Hb_143629_210 Hb_000629_010 Hb_000629_010 Hb_000808_270--Hb_000629_010 Hb_000926_280--Hb_000030_300 Hb_007951_060 Hb_007951_060 Hb_000926_280--Hb_007951_060 Hb_011689_080 Hb_011689_080 Hb_000926_280--Hb_011689_080 Hb_002391_300 Hb_002391_300 Hb_000926_280--Hb_002391_300 Hb_000327_120 Hb_000327_120 Hb_000926_280--Hb_000327_120 Hb_000010_330 Hb_000010_330 Hb_019280_040--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_019280_040--Hb_010457_030 Hb_002835_080 Hb_002835_080 Hb_019280_040--Hb_002835_080 Hb_002200_080 Hb_002200_080 Hb_019280_040--Hb_002200_080 Hb_003417_020 Hb_003417_020 Hb_019280_040--Hb_003417_020 Hb_002026_180 Hb_002026_180 Hb_000030_300--Hb_002026_180 Hb_002496_030 Hb_002496_030 Hb_000030_300--Hb_002496_030 Hb_001242_060 Hb_001242_060 Hb_000030_300--Hb_001242_060 Hb_000030_300--Hb_000808_270 Hb_003766_040--Hb_000808_270 Hb_003766_040--Hb_000926_280 Hb_001489_150 Hb_001489_150 Hb_003766_040--Hb_001489_150 Hb_007416_280 Hb_007416_280 Hb_003766_040--Hb_007416_280 Hb_003766_040--Hb_002026_180 Hb_048937_040--Hb_010457_030 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_048937_040--Hb_000010_330 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8341 10.3059 12.7968 11.4344 21.0517 27.5175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7208 21.6328 22.7008 13.7804 8.31732

CAGE analysis