Hb_003175_020

Information

Type -
Description -
Location Contig3175: 10794-16370
Sequence    

Annotation

kegg
ID rcu:RCOM_0903280
description homeobox protein knotted-1, putative
nr
ID XP_002518420.1
description homeobox protein knotted-1, putative [Ricinus communis]
swissprot
ID P46608
description Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1
trembl
ID B9RXF1
description Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_0903280 PE=4 SV=1
Gene Ontology
ID GO:0007389
description homeobox protein sbh1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33438: 10600-14807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003175_020 0.0 - - homeobox protein knotted-1, putative [Ricinus communis]
2 Hb_025194_010 0.1270786117 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
3 Hb_124302_030 0.1806650668 - - PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]
4 Hb_141142_010 0.1847961859 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
5 Hb_133636_010 0.2004720477 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
6 Hb_007144_010 0.2099536167 - - -
7 Hb_101089_010 0.2106692774 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
8 Hb_000844_010 0.2156154791 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
9 Hb_116635_010 0.2237900653 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_007163_140 0.2294988331 transcription factor TF Family: bHLH hypothetical protein JCGZ_12606 [Jatropha curcas]
11 Hb_001338_050 0.2307869733 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
12 Hb_005157_010 0.231449455 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
13 Hb_003299_010 0.2318587985 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
14 Hb_002553_160 0.2394326256 - - PREDICTED: uncharacterized protein LOC104590935 [Nelumbo nucifera]
15 Hb_000069_090 0.2498433874 - - neutral/alkaline invertase [Manihot esculenta]
16 Hb_003384_070 0.2516031232 - - PREDICTED: methylesterase 17-like [Populus euphratica]
17 Hb_000940_020 0.2516523123 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
18 Hb_003376_340 0.2519964854 - - conserved hypothetical protein [Ricinus communis]
19 Hb_017417_030 0.2554770491 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
20 Hb_003893_020 0.2558185992 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003175_020 Hb_003175_020 Hb_025194_010 Hb_025194_010 Hb_003175_020--Hb_025194_010 Hb_124302_030 Hb_124302_030 Hb_003175_020--Hb_124302_030 Hb_141142_010 Hb_141142_010 Hb_003175_020--Hb_141142_010 Hb_133636_010 Hb_133636_010 Hb_003175_020--Hb_133636_010 Hb_007144_010 Hb_007144_010 Hb_003175_020--Hb_007144_010 Hb_101089_010 Hb_101089_010 Hb_003175_020--Hb_101089_010 Hb_001269_040 Hb_001269_040 Hb_025194_010--Hb_001269_040 Hb_001338_050 Hb_001338_050 Hb_025194_010--Hb_001338_050 Hb_006738_060 Hb_006738_060 Hb_025194_010--Hb_006738_060 Hb_025194_010--Hb_141142_010 Hb_025194_010--Hb_007144_010 Hb_002701_140 Hb_002701_140 Hb_124302_030--Hb_002701_140 Hb_000940_020 Hb_000940_020 Hb_124302_030--Hb_000940_020 Hb_128912_010 Hb_128912_010 Hb_124302_030--Hb_128912_010 Hb_006351_080 Hb_006351_080 Hb_124302_030--Hb_006351_080 Hb_004586_380 Hb_004586_380 Hb_124302_030--Hb_004586_380 Hb_000844_010 Hb_000844_010 Hb_141142_010--Hb_000844_010 Hb_003384_070 Hb_003384_070 Hb_141142_010--Hb_003384_070 Hb_141142_010--Hb_133636_010 Hb_005157_010 Hb_005157_010 Hb_141142_010--Hb_005157_010 Hb_003299_010 Hb_003299_010 Hb_133636_010--Hb_003299_010 Hb_133636_010--Hb_000844_010 Hb_002783_320 Hb_002783_320 Hb_133636_010--Hb_002783_320 Hb_133636_010--Hb_005157_010 Hb_011909_030 Hb_011909_030 Hb_133636_010--Hb_011909_030 Hb_007773_030 Hb_007773_030 Hb_133636_010--Hb_007773_030 Hb_007144_010--Hb_001269_040 Hb_007144_010--Hb_005157_010 Hb_002760_030 Hb_002760_030 Hb_007144_010--Hb_002760_030 Hb_007144_010--Hb_133636_010 Hb_011382_050 Hb_011382_050 Hb_101089_010--Hb_011382_050 Hb_101089_010--Hb_003384_070 Hb_101089_010--Hb_000844_010 Hb_164010_090 Hb_164010_090 Hb_101089_010--Hb_164010_090 Hb_085327_010 Hb_085327_010 Hb_101089_010--Hb_085327_010 Hb_004341_010 Hb_004341_010 Hb_101089_010--Hb_004341_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.382073 10.2462 0.00830515 1.3829 0.828013 1.61471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.25567 0

CAGE analysis