Hb_003175_110

Information

Type -
Description -
Location Contig3175: 92075-92988
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003175_110 0.0 - - -
2 Hb_063943_010 0.1693453361 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
3 Hb_113673_010 0.191538246 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
4 Hb_001266_120 0.1998361054 - - auxilin, putative [Ricinus communis]
5 Hb_085083_020 0.2029726244 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
6 Hb_146339_010 0.2068047457 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
7 Hb_003124_030 0.2074908153 - - At4g33625-like protein [Brassica napus]
8 Hb_010521_030 0.2093059477 - - -
9 Hb_000186_170 0.2166909426 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
10 Hb_085187_010 0.2223523766 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_003632_030 0.2234709847 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
12 Hb_002495_060 0.2249304761 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000482_150 0.2271220823 - - PREDICTED: zinc transporter 4, chloroplastic [Jatropha curcas]
14 Hb_005523_010 0.2281399163 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
15 Hb_000172_350 0.2282805995 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
16 Hb_003059_010 0.2291664651 - - PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
17 Hb_002320_090 0.2306737971 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
18 Hb_177343_010 0.230792373 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
19 Hb_022250_100 0.2319333813 - - calnexin, putative [Ricinus communis]
20 Hb_119622_010 0.2326598842 - - LRR receptor-like kinase family protein [Medicago truncatula]

Gene co-expression network

sample Hb_003175_110 Hb_003175_110 Hb_063943_010 Hb_063943_010 Hb_003175_110--Hb_063943_010 Hb_113673_010 Hb_113673_010 Hb_003175_110--Hb_113673_010 Hb_001266_120 Hb_001266_120 Hb_003175_110--Hb_001266_120 Hb_085083_020 Hb_085083_020 Hb_003175_110--Hb_085083_020 Hb_146339_010 Hb_146339_010 Hb_003175_110--Hb_146339_010 Hb_003124_030 Hb_003124_030 Hb_003175_110--Hb_003124_030 Hb_063943_010--Hb_146339_010 Hb_003059_010 Hb_003059_010 Hb_063943_010--Hb_003059_010 Hb_089206_010 Hb_089206_010 Hb_063943_010--Hb_089206_010 Hb_183443_010 Hb_183443_010 Hb_063943_010--Hb_183443_010 Hb_063943_010--Hb_003124_030 Hb_003327_020 Hb_003327_020 Hb_113673_010--Hb_003327_020 Hb_000094_040 Hb_000094_040 Hb_113673_010--Hb_000094_040 Hb_000078_090 Hb_000078_090 Hb_113673_010--Hb_000078_090 Hb_010521_030 Hb_010521_030 Hb_113673_010--Hb_010521_030 Hb_078106_010 Hb_078106_010 Hb_113673_010--Hb_078106_010 Hb_002320_090 Hb_002320_090 Hb_001266_120--Hb_002320_090 Hb_005288_110 Hb_005288_110 Hb_001266_120--Hb_005288_110 Hb_024570_040 Hb_024570_040 Hb_001266_120--Hb_024570_040 Hb_003632_030 Hb_003632_030 Hb_001266_120--Hb_003632_030 Hb_085187_010 Hb_085187_010 Hb_001266_120--Hb_085187_010 Hb_177343_010 Hb_177343_010 Hb_001266_120--Hb_177343_010 Hb_000964_070 Hb_000964_070 Hb_085083_020--Hb_000964_070 Hb_066487_010 Hb_066487_010 Hb_085083_020--Hb_066487_010 Hb_085083_020--Hb_063943_010 Hb_005523_010 Hb_005523_010 Hb_085083_020--Hb_005523_010 Hb_090530_010 Hb_090530_010 Hb_085083_020--Hb_090530_010 Hb_146339_010--Hb_183443_010 Hb_146339_010--Hb_003059_010 Hb_146339_010--Hb_089206_010 Hb_000714_040 Hb_000714_040 Hb_146339_010--Hb_000714_040 Hb_156850_090 Hb_156850_090 Hb_003124_030--Hb_156850_090 Hb_000562_050 Hb_000562_050 Hb_003124_030--Hb_000562_050 Hb_001008_050 Hb_001008_050 Hb_003124_030--Hb_001008_050 Hb_158092_080 Hb_158092_080 Hb_003124_030--Hb_158092_080 Hb_001789_020 Hb_001789_020 Hb_003124_030--Hb_001789_020 Hb_001085_290 Hb_001085_290 Hb_003124_030--Hb_001085_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.320688 0.189929 0.153561 0.382535 0.46341 0.177447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.282335 0.393575 0.928156

CAGE analysis