Hb_003175_120

Information

Type -
Description -
Location Contig3175: 112826-122687
Sequence    

Annotation

kegg
ID pop:POPTR_0004s00520g
description hypothetical protein
nr
ID XP_011047002.1
description PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
swissprot
ID P83757
description NF-kappa-B inhibitor cactus OS=Drosophila yakuba GN=cact PE=3 SV=1
trembl
ID W9RY12
description Ankyrin repeat-containing protein OS=Morus notabilis GN=L484_014142 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003175_120 0.0 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
2 Hb_135757_030 0.0779975934 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
3 Hb_009079_020 0.0789501266 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
4 Hb_002260_140 0.0893890365 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001500_020 0.0951662102 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_006153_140 0.095437409 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
7 Hb_021596_050 0.1005447967 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001818_010 0.1040342619 - - Disease resistance response protein, putative [Ricinus communis]
9 Hb_005127_050 0.104200972 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
10 Hb_028514_010 0.1082345318 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
11 Hb_000172_450 0.1090938465 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
12 Hb_000922_050 0.1093160923 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
13 Hb_112950_010 0.1097608448 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
14 Hb_150299_010 0.1101307137 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
15 Hb_006351_050 0.1126987025 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
16 Hb_003598_050 0.1158312712 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
17 Hb_000724_060 0.1196793078 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
18 Hb_006088_020 0.1215718482 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_002686_220 0.1224427389 - - PREDICTED: expansin-A15-like [Jatropha curcas]
20 Hb_051212_020 0.1225849401 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003175_120 Hb_003175_120 Hb_135757_030 Hb_135757_030 Hb_003175_120--Hb_135757_030 Hb_009079_020 Hb_009079_020 Hb_003175_120--Hb_009079_020 Hb_002260_140 Hb_002260_140 Hb_003175_120--Hb_002260_140 Hb_001500_020 Hb_001500_020 Hb_003175_120--Hb_001500_020 Hb_006153_140 Hb_006153_140 Hb_003175_120--Hb_006153_140 Hb_021596_050 Hb_021596_050 Hb_003175_120--Hb_021596_050 Hb_135757_030--Hb_002260_140 Hb_135757_030--Hb_001500_020 Hb_001818_010 Hb_001818_010 Hb_135757_030--Hb_001818_010 Hb_003598_050 Hb_003598_050 Hb_135757_030--Hb_003598_050 Hb_006351_050 Hb_006351_050 Hb_135757_030--Hb_006351_050 Hb_009079_020--Hb_006153_140 Hb_009079_020--Hb_002260_140 Hb_009079_020--Hb_001818_010 Hb_000724_060 Hb_000724_060 Hb_009079_020--Hb_000724_060 Hb_112950_010 Hb_112950_010 Hb_009079_020--Hb_112950_010 Hb_002686_220 Hb_002686_220 Hb_009079_020--Hb_002686_220 Hb_002260_140--Hb_001818_010 Hb_002260_140--Hb_001500_020 Hb_000172_450 Hb_000172_450 Hb_002260_140--Hb_000172_450 Hb_002260_140--Hb_112950_010 Hb_001500_020--Hb_006351_050 Hb_180088_010 Hb_180088_010 Hb_001500_020--Hb_180088_010 Hb_001500_020--Hb_003598_050 Hb_001500_020--Hb_112950_010 Hb_001500_020--Hb_000172_450 Hb_006153_140--Hb_002686_220 Hb_006153_140--Hb_001818_010 Hb_006153_140--Hb_112950_010 Hb_000866_130 Hb_000866_130 Hb_006153_140--Hb_000866_130 Hb_015175_070 Hb_015175_070 Hb_006153_140--Hb_015175_070 Hb_009421_060 Hb_009421_060 Hb_021596_050--Hb_009421_060 Hb_000083_200 Hb_000083_200 Hb_021596_050--Hb_000083_200 Hb_021596_050--Hb_001500_020 Hb_021596_050--Hb_180088_010 Hb_021596_050--Hb_112950_010 Hb_001579_160 Hb_001579_160 Hb_021596_050--Hb_001579_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0161315 0.114009 0.238471 1.17853 0.00807011 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00913144 0 0 0.0113779 0.216038

CAGE analysis