Hb_003177_010

Information

Type -
Description -
Location Contig3177: 19269-22554
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02510g
description POPTRDRAFT_816022; abscisic acid-responsive HVA22 family protein
nr
ID XP_011028996.1
description PREDICTED: putative HVA22-like protein g [Populus euphratica]
swissprot
ID Q8LE10
description HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2
trembl
ID B9GQW2
description HVA22-like protein OS=Populus trichocarpa GN=POPTR_0002s02510g PE=3 SV=2
Gene Ontology
ID GO:0016020
description hva22-like protein g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33457: 19268-22759
cDNA
(Sanger)
(ID:Location)		 004_J10.ab1: 19977-22727 , 032_A07.ab1: 20491-22727

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003177_010 0.0 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
2 Hb_009693_030 0.1338648124 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_162378_010 0.1561017229 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
4 Hb_002267_090 0.1601002088 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
5 Hb_001279_330 0.1663042603 - - Protein bem46, putative [Ricinus communis]
6 Hb_000789_100 0.1668137108 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
7 Hb_000265_220 0.1745387929 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
8 Hb_000544_180 0.1758060503 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
9 Hb_004218_070 0.1779615714 - - annexin [Manihot esculenta]
10 Hb_073973_160 0.180757441 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
11 Hb_009485_020 0.1827344278 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
12 Hb_003858_040 0.1846335064 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
13 Hb_000920_280 0.1884008596 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
14 Hb_000116_460 0.1887004551 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
15 Hb_000996_180 0.1889534396 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
16 Hb_005271_080 0.1901613542 - - receptor kinase, putative [Ricinus communis]
17 Hb_130323_010 0.1904199861 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
18 Hb_002235_130 0.1904391724 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001882_110 0.1905360856 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_050686_010 0.1908213196 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003177_010 Hb_003177_010 Hb_009693_030 Hb_009693_030 Hb_003177_010--Hb_009693_030 Hb_162378_010 Hb_162378_010 Hb_003177_010--Hb_162378_010 Hb_002267_090 Hb_002267_090 Hb_003177_010--Hb_002267_090 Hb_001279_330 Hb_001279_330 Hb_003177_010--Hb_001279_330 Hb_000789_100 Hb_000789_100 Hb_003177_010--Hb_000789_100 Hb_000265_220 Hb_000265_220 Hb_003177_010--Hb_000265_220 Hb_000996_180 Hb_000996_180 Hb_009693_030--Hb_000996_180 Hb_089889_020 Hb_089889_020 Hb_009693_030--Hb_089889_020 Hb_001910_020 Hb_001910_020 Hb_009693_030--Hb_001910_020 Hb_107847_010 Hb_107847_010 Hb_009693_030--Hb_107847_010 Hb_073973_160 Hb_073973_160 Hb_009693_030--Hb_073973_160 Hb_003858_040 Hb_003858_040 Hb_162378_010--Hb_003858_040 Hb_000002_490 Hb_000002_490 Hb_162378_010--Hb_000002_490 Hb_001050_010 Hb_001050_010 Hb_162378_010--Hb_001050_010 Hb_000556_150 Hb_000556_150 Hb_162378_010--Hb_000556_150 Hb_000480_010 Hb_000480_010 Hb_162378_010--Hb_000480_010 Hb_000392_370 Hb_000392_370 Hb_162378_010--Hb_000392_370 Hb_000920_280 Hb_000920_280 Hb_002267_090--Hb_000920_280 Hb_002267_090--Hb_001279_330 Hb_000617_220 Hb_000617_220 Hb_002267_090--Hb_000617_220 Hb_000640_220 Hb_000640_220 Hb_002267_090--Hb_000640_220 Hb_006623_020 Hb_006623_020 Hb_002267_090--Hb_006623_020 Hb_001754_240 Hb_001754_240 Hb_002267_090--Hb_001754_240 Hb_007757_100 Hb_007757_100 Hb_001279_330--Hb_007757_100 Hb_000424_230 Hb_000424_230 Hb_001279_330--Hb_000424_230 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_005368_010 Hb_005368_010 Hb_001279_330--Hb_005368_010 Hb_005271_080 Hb_005271_080 Hb_001279_330--Hb_005271_080 Hb_008406_140 Hb_008406_140 Hb_001279_330--Hb_008406_140 Hb_000297_110 Hb_000297_110 Hb_000789_100--Hb_000297_110 Hb_010968_010 Hb_010968_010 Hb_000789_100--Hb_010968_010 Hb_000789_100--Hb_000920_280 Hb_001484_060 Hb_001484_060 Hb_000789_100--Hb_001484_060 Hb_000676_050 Hb_000676_050 Hb_000789_100--Hb_000676_050 Hb_000482_110 Hb_000482_110 Hb_000789_100--Hb_000482_110 Hb_000809_210 Hb_000809_210 Hb_000265_220--Hb_000809_210 Hb_002896_060 Hb_002896_060 Hb_000265_220--Hb_002896_060 Hb_027380_030 Hb_027380_030 Hb_000265_220--Hb_027380_030 Hb_011915_010 Hb_011915_010 Hb_000265_220--Hb_011915_010 Hb_000453_140 Hb_000453_140 Hb_000265_220--Hb_000453_140 Hb_002681_170 Hb_002681_170 Hb_000265_220--Hb_002681_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
168.768 43.4569 74.9071 111.628 214.689 103.337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.6191 17.2236 11.1731 11.3622 18.0935

CAGE analysis