Hb_003177_020

Information

Type -
Description -
Location Contig3177: 35458-40218
Sequence    

Annotation

kegg
ID rcu:RCOM_1597420
description diphthine synthase, putative (EC:2.1.1.98)
nr
ID XP_002510518.1
description diphthine synthase, putative [Ricinus communis]
swissprot
ID O81769
description Probable diphthine synthase OS=Arabidopsis thaliana GN=At4g31790 PE=2 SV=1
trembl
ID B9R875
description Diphthine synthase, putative OS=Ricinus communis GN=RCOM_1597420 PE=3 SV=1
Gene Ontology
ID GO:0004164
description probable diphthine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33459: 32693-40206
cDNA
(Sanger)
(ID:Location)		 033_N19.ab1: 37294-38464

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003177_020 0.0 - - diphthine synthase, putative [Ricinus communis]
2 Hb_002471_240 0.0653216855 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
3 Hb_003363_080 0.0726140432 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
4 Hb_002445_060 0.0782110501 - - arf gtpase-activating protein, putative [Ricinus communis]
5 Hb_002889_010 0.0789322327 - - ubx domain-containing, putative [Ricinus communis]
6 Hb_002445_100 0.0822168397 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
7 Hb_001377_310 0.0859468923 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
8 Hb_028872_090 0.0884127545 - - PREDICTED: urease [Jatropha curcas]
9 Hb_008114_040 0.0885072706 - - Fanconi anemia group D2 [Gossypium arboreum]
10 Hb_105328_020 0.0894129658 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
11 Hb_000163_220 0.0902594628 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
12 Hb_000981_030 0.0910817411 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
13 Hb_016777_040 0.0920143263 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
14 Hb_000170_090 0.092663856 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
15 Hb_106552_020 0.0931140513 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
16 Hb_000005_220 0.0933988716 - - DNA ligase 1, partial [Glycine soja]
17 Hb_004319_080 0.0934502061 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
18 Hb_005460_050 0.0936721253 - - COR413-PM2, putative [Ricinus communis]
19 Hb_004586_060 0.0944059616 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
20 Hb_003430_050 0.0950990609 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]

Gene co-expression network

sample Hb_003177_020 Hb_003177_020 Hb_002471_240 Hb_002471_240 Hb_003177_020--Hb_002471_240 Hb_003363_080 Hb_003363_080 Hb_003177_020--Hb_003363_080 Hb_002445_060 Hb_002445_060 Hb_003177_020--Hb_002445_060 Hb_002889_010 Hb_002889_010 Hb_003177_020--Hb_002889_010 Hb_002445_100 Hb_002445_100 Hb_003177_020--Hb_002445_100 Hb_001377_310 Hb_001377_310 Hb_003177_020--Hb_001377_310 Hb_002471_240--Hb_002889_010 Hb_016777_040 Hb_016777_040 Hb_002471_240--Hb_016777_040 Hb_028960_020 Hb_028960_020 Hb_002471_240--Hb_028960_020 Hb_003883_060 Hb_003883_060 Hb_002471_240--Hb_003883_060 Hb_002471_240--Hb_001377_310 Hb_007062_030 Hb_007062_030 Hb_003363_080--Hb_007062_030 Hb_000170_090 Hb_000170_090 Hb_003363_080--Hb_000170_090 Hb_005765_010 Hb_005765_010 Hb_003363_080--Hb_005765_010 Hb_003363_080--Hb_001377_310 Hb_000981_030 Hb_000981_030 Hb_003363_080--Hb_000981_030 Hb_000215_300 Hb_000215_300 Hb_002445_060--Hb_000215_300 Hb_006059_040 Hb_006059_040 Hb_002445_060--Hb_006059_040 Hb_000140_290 Hb_000140_290 Hb_002445_060--Hb_000140_290 Hb_006588_170 Hb_006588_170 Hb_002445_060--Hb_006588_170 Hb_004705_170 Hb_004705_170 Hb_002445_060--Hb_004705_170 Hb_002889_010--Hb_016777_040 Hb_003861_050 Hb_003861_050 Hb_002889_010--Hb_003861_050 Hb_002889_010--Hb_001377_310 Hb_000816_250 Hb_000816_250 Hb_002889_010--Hb_000816_250 Hb_000134_270 Hb_000134_270 Hb_002889_010--Hb_000134_270 Hb_000416_110 Hb_000416_110 Hb_002445_100--Hb_000416_110 Hb_005779_010 Hb_005779_010 Hb_002445_100--Hb_005779_010 Hb_000005_220 Hb_000005_220 Hb_002445_100--Hb_000005_220 Hb_000339_040 Hb_000339_040 Hb_002445_100--Hb_000339_040 Hb_106552_020 Hb_106552_020 Hb_002445_100--Hb_106552_020 Hb_002445_100--Hb_002889_010 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_001377_310--Hb_000170_090 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.71048 7.22749 11.0811 10.2712 5.07275 9.8153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.95788 6.18454 5.13764 12.2668 5.87914

CAGE analysis