Hb_003177_030

Information

Type -
Description -
Location Contig3177: 40358-41924
Sequence    

Annotation

kegg
ID rcu:RCOM_1597410
description hypothetical protein
nr
ID XP_012073818.1
description PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R874
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1597410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33462: 40468-41893 , PASA_asmbl_33464: 42579-42949
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003177_030 0.0 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
2 Hb_000749_220 0.0379689034 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
3 Hb_001009_270 0.0554915142 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
4 Hb_005144_160 0.0585787974 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
5 Hb_000676_250 0.0596257203 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
6 Hb_001159_130 0.0602426501 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
7 Hb_000019_030 0.0657007199 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
8 Hb_000003_250 0.0678626158 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
9 Hb_001799_210 0.0688066886 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
10 Hb_000465_160 0.0704376789 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
11 Hb_000172_290 0.0712130616 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
12 Hb_019280_040 0.0752807212 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002809_050 0.0753074135 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
14 Hb_004907_080 0.0753505062 - - zinc finger protein, putative [Ricinus communis]
15 Hb_001633_130 0.0753743916 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
16 Hb_000477_060 0.0759931276 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
17 Hb_002200_080 0.0762301579 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
18 Hb_000777_040 0.0767255175 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
19 Hb_000116_270 0.0771357998 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
20 Hb_001711_020 0.077341461 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]

Gene co-expression network

sample Hb_003177_030 Hb_003177_030 Hb_000749_220 Hb_000749_220 Hb_003177_030--Hb_000749_220 Hb_001009_270 Hb_001009_270 Hb_003177_030--Hb_001009_270 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_001159_130 Hb_001159_130 Hb_003177_030--Hb_001159_130 Hb_000019_030 Hb_000019_030 Hb_003177_030--Hb_000019_030 Hb_000172_290 Hb_000172_290 Hb_000749_220--Hb_000172_290 Hb_000477_060 Hb_000477_060 Hb_000749_220--Hb_000477_060 Hb_000003_250 Hb_000003_250 Hb_000749_220--Hb_000003_250 Hb_005490_030 Hb_005490_030 Hb_000749_220--Hb_005490_030 Hb_000749_220--Hb_001159_130 Hb_004907_080 Hb_004907_080 Hb_001009_270--Hb_004907_080 Hb_032208_090 Hb_032208_090 Hb_001009_270--Hb_032208_090 Hb_000777_040 Hb_000777_040 Hb_001009_270--Hb_000777_040 Hb_001799_210 Hb_001799_210 Hb_001009_270--Hb_001799_210 Hb_000465_160 Hb_000465_160 Hb_001009_270--Hb_000465_160 Hb_000580_180 Hb_000580_180 Hb_005144_160--Hb_000580_180 Hb_007691_030 Hb_007691_030 Hb_005144_160--Hb_007691_030 Hb_002200_080 Hb_002200_080 Hb_005144_160--Hb_002200_080 Hb_002863_050 Hb_002863_050 Hb_005144_160--Hb_002863_050 Hb_006634_070 Hb_006634_070 Hb_005144_160--Hb_006634_070 Hb_023344_120 Hb_023344_120 Hb_000676_250--Hb_023344_120 Hb_027380_130 Hb_027380_130 Hb_000676_250--Hb_027380_130 Hb_000676_250--Hb_000019_030 Hb_001711_020 Hb_001711_020 Hb_000676_250--Hb_001711_020 Hb_000676_250--Hb_005144_160 Hb_000116_270 Hb_000116_270 Hb_001159_130--Hb_000116_270 Hb_155159_020 Hb_155159_020 Hb_001159_130--Hb_155159_020 Hb_000603_150 Hb_000603_150 Hb_001159_130--Hb_000603_150 Hb_000200_020 Hb_000200_020 Hb_001159_130--Hb_000200_020 Hb_001159_130--Hb_000019_030 Hb_005357_080 Hb_005357_080 Hb_000019_030--Hb_005357_080 Hb_001575_090 Hb_001575_090 Hb_000019_030--Hb_001575_090 Hb_000120_670 Hb_000120_670 Hb_000019_030--Hb_000120_670 Hb_011671_240 Hb_011671_240 Hb_000019_030--Hb_011671_240 Hb_000468_060 Hb_000468_060 Hb_000019_030--Hb_000468_060 Hb_000618_040 Hb_000618_040 Hb_000019_030--Hb_000618_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3823 7.84513 11.0925 18.4485 15.6058 17.5039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0314 17.9152 25.2546 12.9898 11.8427

CAGE analysis