Hb_003177_060

Information

Type -
Description -
Location Contig3177: 66125-77961
Sequence    

Annotation

kegg
ID rcu:RCOM_1597380
description 5'->3' exoribonuclease, putative
nr
ID XP_012073821.1
description PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
swissprot
ID Q9FQ02
description 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1
trembl
ID A0A067KL13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08232 PE=4 SV=1
Gene Ontology
ID GO:0005634
description 5 -3 exoribonuclease 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33469: 66045-77908 , PASA_asmbl_33470: 67436-72190 , PASA_asmbl_33471: 69029-69270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003177_060 0.0 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
2 Hb_003498_120 0.0594675034 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
3 Hb_007426_130 0.0679042959 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
4 Hb_001821_090 0.0698168789 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
5 Hb_000069_410 0.0750632224 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
6 Hb_012184_060 0.0774581779 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
7 Hb_000740_100 0.0794221368 - - calpain, putative [Ricinus communis]
8 Hb_000170_150 0.0816615362 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
9 Hb_001377_160 0.0818570256 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
10 Hb_028487_010 0.0818640313 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
11 Hb_000579_230 0.0830751127 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
12 Hb_003058_060 0.0844316491 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
13 Hb_001946_340 0.084496725 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
14 Hb_003912_070 0.0851092852 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
15 Hb_003581_170 0.0855594673 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
16 Hb_009615_170 0.0871313406 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
17 Hb_005542_140 0.0871707368 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
18 Hb_013399_070 0.0876600408 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
19 Hb_002784_010 0.087836281 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
20 Hb_007123_030 0.0878576818 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_003177_060 Hb_003177_060 Hb_003498_120 Hb_003498_120 Hb_003177_060--Hb_003498_120 Hb_007426_130 Hb_007426_130 Hb_003177_060--Hb_007426_130 Hb_001821_090 Hb_001821_090 Hb_003177_060--Hb_001821_090 Hb_000069_410 Hb_000069_410 Hb_003177_060--Hb_000069_410 Hb_012184_060 Hb_012184_060 Hb_003177_060--Hb_012184_060 Hb_000740_100 Hb_000740_100 Hb_003177_060--Hb_000740_100 Hb_001377_160 Hb_001377_160 Hb_003498_120--Hb_001377_160 Hb_000505_020 Hb_000505_020 Hb_003498_120--Hb_000505_020 Hb_001235_140 Hb_001235_140 Hb_003498_120--Hb_001235_140 Hb_003498_120--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_003498_120--Hb_005143_030 Hb_000922_370 Hb_000922_370 Hb_007426_130--Hb_000922_370 Hb_002329_040 Hb_002329_040 Hb_007426_130--Hb_002329_040 Hb_009615_170 Hb_009615_170 Hb_007426_130--Hb_009615_170 Hb_000183_020 Hb_000183_020 Hb_007426_130--Hb_000183_020 Hb_007426_130--Hb_001821_090 Hb_000261_030 Hb_000261_030 Hb_007426_130--Hb_000261_030 Hb_001821_090--Hb_000069_410 Hb_001821_090--Hb_009615_170 Hb_002107_070 Hb_002107_070 Hb_001821_090--Hb_002107_070 Hb_028487_010 Hb_028487_010 Hb_001821_090--Hb_028487_010 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_000579_230 Hb_000579_230 Hb_001821_090--Hb_000579_230 Hb_001575_010 Hb_001575_010 Hb_000069_410--Hb_001575_010 Hb_003581_170 Hb_003581_170 Hb_000069_410--Hb_003581_170 Hb_023226_080 Hb_023226_080 Hb_000069_410--Hb_023226_080 Hb_001699_280 Hb_001699_280 Hb_000069_410--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_000069_410--Hb_000105_040 Hb_000836_020 Hb_000836_020 Hb_012184_060--Hb_000836_020 Hb_009476_090 Hb_009476_090 Hb_012184_060--Hb_009476_090 Hb_012184_060--Hb_001699_280 Hb_002784_010 Hb_002784_010 Hb_012184_060--Hb_002784_010 Hb_188063_010 Hb_188063_010 Hb_012184_060--Hb_188063_010 Hb_000740_100--Hb_002329_040 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_008024_030 Hb_008024_030 Hb_000740_100--Hb_008024_030 Hb_011173_030 Hb_011173_030 Hb_000740_100--Hb_011173_030 Hb_104061_020 Hb_104061_020 Hb_000740_100--Hb_104061_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6421 22.0017 9.78849 10.377 13.6662 21.2634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.68444 5.78642 7.31043 19.7546 11.906

CAGE analysis