Hb_003177_100

Information

Type -
Description -
Location Contig3177: 122841-123293
Sequence    

Annotation

kegg
ID tcc:TCM_034196
description SAUR-like auxin-responsive protein family
nr
ID XP_012073829.1
description PREDICTED: auxin-induced protein 6B [Jatropha curcas]
swissprot
ID Q9SGU2
description Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana GN=SAUR71 PE=2 SV=1
trembl
ID A0A067KXE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08236 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003177_100 0.0 - - PREDICTED: auxin-induced protein 6B [Jatropha curcas]
2 Hb_009615_030 0.1111680258 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_081191_010 0.1199904853 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
4 Hb_004785_150 0.1286356789 - - hypothetical protein JCGZ_25207 [Jatropha curcas]
5 Hb_002580_020 0.1339401365 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
6 Hb_001863_520 0.1373504218 - - conserved hypothetical protein [Ricinus communis]
7 Hb_161346_010 0.1394481332 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
8 Hb_000329_570 0.1463611197 - - -
9 Hb_000705_110 0.1503589011 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
10 Hb_000743_070 0.1506581414 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
11 Hb_009780_110 0.1540715105 - - PREDICTED: protein RSI-1 [Cicer arietinum]
12 Hb_002097_180 0.1546643616 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
13 Hb_000028_620 0.1589493432 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002818_170 0.1600080151 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
15 Hb_182831_020 0.160369242 - - multidrug resistance pump, putative [Ricinus communis]
16 Hb_020112_010 0.1613161758 - - acyltransferase, putative [Ricinus communis]
17 Hb_014865_010 0.1650133671 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
18 Hb_003789_020 0.1656300524 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
19 Hb_001300_060 0.1690564503 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
20 Hb_000496_080 0.1693043371 - - Proteinase inhibitor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003177_100 Hb_003177_100 Hb_009615_030 Hb_009615_030 Hb_003177_100--Hb_009615_030 Hb_081191_010 Hb_081191_010 Hb_003177_100--Hb_081191_010 Hb_004785_150 Hb_004785_150 Hb_003177_100--Hb_004785_150 Hb_002580_020 Hb_002580_020 Hb_003177_100--Hb_002580_020 Hb_001863_520 Hb_001863_520 Hb_003177_100--Hb_001863_520 Hb_161346_010 Hb_161346_010 Hb_003177_100--Hb_161346_010 Hb_009615_030--Hb_002580_020 Hb_009615_030--Hb_081191_010 Hb_000749_160 Hb_000749_160 Hb_009615_030--Hb_000749_160 Hb_002097_180 Hb_002097_180 Hb_009615_030--Hb_002097_180 Hb_000429_030 Hb_000429_030 Hb_009615_030--Hb_000429_030 Hb_081191_010--Hb_002580_020 Hb_003811_050 Hb_003811_050 Hb_081191_010--Hb_003811_050 Hb_081191_010--Hb_000429_030 Hb_002413_030 Hb_002413_030 Hb_081191_010--Hb_002413_030 Hb_000329_570 Hb_000329_570 Hb_004785_150--Hb_000329_570 Hb_000743_070 Hb_000743_070 Hb_004785_150--Hb_000743_070 Hb_020112_010 Hb_020112_010 Hb_004785_150--Hb_020112_010 Hb_000496_080 Hb_000496_080 Hb_004785_150--Hb_000496_080 Hb_010308_010 Hb_010308_010 Hb_004785_150--Hb_010308_010 Hb_001300_060 Hb_001300_060 Hb_004785_150--Hb_001300_060 Hb_002580_020--Hb_003811_050 Hb_000676_130 Hb_000676_130 Hb_002580_020--Hb_000676_130 Hb_006834_010 Hb_006834_010 Hb_002580_020--Hb_006834_010 Hb_000853_010 Hb_000853_010 Hb_002580_020--Hb_000853_010 Hb_162815_010 Hb_162815_010 Hb_001863_520--Hb_162815_010 Hb_110631_010 Hb_110631_010 Hb_001863_520--Hb_110631_010 Hb_001863_520--Hb_001300_060 Hb_001863_520--Hb_010308_010 Hb_001863_520--Hb_000496_080 Hb_004330_050 Hb_004330_050 Hb_001863_520--Hb_004330_050 Hb_182831_020 Hb_182831_020 Hb_161346_010--Hb_182831_020 Hb_003171_070 Hb_003171_070 Hb_161346_010--Hb_003171_070 Hb_131029_010 Hb_131029_010 Hb_161346_010--Hb_131029_010 Hb_000676_380 Hb_000676_380 Hb_161346_010--Hb_000676_380 Hb_161346_010--Hb_002413_030 Hb_003789_020 Hb_003789_020 Hb_161346_010--Hb_003789_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0705646 0.985771 4.60746 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.50847 0.227418

CAGE analysis