Hb_003177_120

Information

Type -
Description -
Location Contig3177: 140966-143007
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28800g
description putative disease resistance gene NBS-LRR family protein
nr
ID XP_011045818.1
description PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID U5GCE5
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0006s28800g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003177_120 0.0 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
2 Hb_000204_200 0.2104448311 - - hypothetical protein VITISV_019818 [Vitis vinifera]
3 Hb_030630_010 0.21048882 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
4 Hb_009474_010 0.2118778107 - - -
5 Hb_007768_030 0.2131607114 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000661_190 0.2294252601 - - PREDICTED: protein spt2-like [Jatropha curcas]
7 Hb_000370_010 0.2360581875 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
8 Hb_000211_060 0.256243529 - - glutathione peroxidase [Populus euphratica]
9 Hb_010626_020 0.2880140546 - - -
10 Hb_003446_040 0.3179272532 - - -
11 Hb_021156_030 0.318837742 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
12 Hb_004316_090 0.3442992086 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
13 Hb_006355_050 0.3658938359 - - -
14 Hb_003760_040 0.3659495709 - - organic anion transporter, putative [Ricinus communis]
15 Hb_000453_220 0.3682910408 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
16 Hb_004970_210 0.3729576368 - - -
17 Hb_000544_140 0.3757553407 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
18 Hb_161929_010 0.3773089435 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
19 Hb_007021_010 0.3776419101 transcription factor TF Family: B3 hypothetical protein RCOM_0939100 [Ricinus communis]
20 Hb_123521_010 0.3795130781 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_003177_120 Hb_003177_120 Hb_000204_200 Hb_000204_200 Hb_003177_120--Hb_000204_200 Hb_030630_010 Hb_030630_010 Hb_003177_120--Hb_030630_010 Hb_009474_010 Hb_009474_010 Hb_003177_120--Hb_009474_010 Hb_007768_030 Hb_007768_030 Hb_003177_120--Hb_007768_030 Hb_000661_190 Hb_000661_190 Hb_003177_120--Hb_000661_190 Hb_000370_010 Hb_000370_010 Hb_003177_120--Hb_000370_010 Hb_000204_200--Hb_030630_010 Hb_000204_200--Hb_009474_010 Hb_000204_200--Hb_007768_030 Hb_000204_200--Hb_000661_190 Hb_000204_200--Hb_000370_010 Hb_000211_060 Hb_000211_060 Hb_000204_200--Hb_000211_060 Hb_030630_010--Hb_009474_010 Hb_030630_010--Hb_007768_030 Hb_030630_010--Hb_000661_190 Hb_030630_010--Hb_000370_010 Hb_030630_010--Hb_000211_060 Hb_009474_010--Hb_007768_030 Hb_009474_010--Hb_000661_190 Hb_009474_010--Hb_000211_060 Hb_009474_010--Hb_000370_010 Hb_007768_030--Hb_000661_190 Hb_007768_030--Hb_000211_060 Hb_007768_030--Hb_000370_010 Hb_000661_190--Hb_000211_060 Hb_021156_030 Hb_021156_030 Hb_000661_190--Hb_021156_030 Hb_010626_020 Hb_010626_020 Hb_000370_010--Hb_010626_020 Hb_000370_010--Hb_000661_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0144225 0 0.0366141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.11706 0 0

CAGE analysis