Hb_003181_050

Information

Type -
Description -
Location Contig3181: 40981-52130
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21110g
description POPTRDRAFT_885298; hypothetical protein
nr
ID XP_012089202.1
description PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
swissprot
ID Q9C7A8
description DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana GN=GINS2 PE=2 SV=2
trembl
ID A0A067LJV2
description DNA replication complex GINS protein PSF2 OS=Jatropha curcas GN=JCGZ_01455 PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna replication complex gins protein psf2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33585: 40991-51988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003181_050 0.0 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
2 Hb_001386_050 0.1140040632 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
3 Hb_001785_040 0.1181169485 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
4 Hb_032969_030 0.1202308437 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_089100_020 0.1241589688 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
6 Hb_003198_010 0.1314066753 - - Valine--tRNA ligase [Gossypium arboreum]
7 Hb_002802_020 0.131782934 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
8 Hb_000260_200 0.1341114274 - - -
9 Hb_004567_020 0.1380625041 - - Small ubiquitin-related modifier 2 [Morus notabilis]
10 Hb_000110_170 0.1401608987 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000878_020 0.1404790671 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
12 Hb_000805_130 0.1410126539 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004545_130 0.14258535 - - uncharacterized protein LOC100305465 [Glycine max]
14 Hb_000111_100 0.1430124374 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
15 Hb_000645_140 0.1448885506 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
16 Hb_000696_220 0.1457143169 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
17 Hb_003581_220 0.1474540188 - - unnamed protein product [Vitis vinifera]
18 Hb_001863_420 0.148095626 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
19 Hb_008948_050 0.1484144717 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
20 Hb_000976_250 0.1491796145 - - -

Gene co-expression network

sample Hb_003181_050 Hb_003181_050 Hb_001386_050 Hb_001386_050 Hb_003181_050--Hb_001386_050 Hb_001785_040 Hb_001785_040 Hb_003181_050--Hb_001785_040 Hb_032969_030 Hb_032969_030 Hb_003181_050--Hb_032969_030 Hb_089100_020 Hb_089100_020 Hb_003181_050--Hb_089100_020 Hb_003198_010 Hb_003198_010 Hb_003181_050--Hb_003198_010 Hb_002802_020 Hb_002802_020 Hb_003181_050--Hb_002802_020 Hb_008948_050 Hb_008948_050 Hb_001386_050--Hb_008948_050 Hb_000878_020 Hb_000878_020 Hb_001386_050--Hb_000878_020 Hb_002344_070 Hb_002344_070 Hb_001386_050--Hb_002344_070 Hb_000853_240 Hb_000853_240 Hb_001386_050--Hb_000853_240 Hb_006588_080 Hb_006588_080 Hb_001386_050--Hb_006588_080 Hb_000805_130 Hb_000805_130 Hb_001386_050--Hb_000805_130 Hb_001604_030 Hb_001604_030 Hb_001785_040--Hb_001604_030 Hb_000260_200 Hb_000260_200 Hb_001785_040--Hb_000260_200 Hb_002603_150 Hb_002603_150 Hb_001785_040--Hb_002603_150 Hb_001785_040--Hb_032969_030 Hb_000012_100 Hb_000012_100 Hb_001785_040--Hb_000012_100 Hb_001785_040--Hb_089100_020 Hb_000300_390 Hb_000300_390 Hb_032969_030--Hb_000300_390 Hb_003581_220 Hb_003581_220 Hb_032969_030--Hb_003581_220 Hb_005663_120 Hb_005663_120 Hb_032969_030--Hb_005663_120 Hb_000976_250 Hb_000976_250 Hb_032969_030--Hb_000976_250 Hb_001157_010 Hb_001157_010 Hb_032969_030--Hb_001157_010 Hb_000696_220 Hb_000696_220 Hb_089100_020--Hb_000696_220 Hb_089100_020--Hb_000853_240 Hb_089100_020--Hb_003198_010 Hb_000191_020 Hb_000191_020 Hb_089100_020--Hb_000191_020 Hb_003198_010--Hb_000696_220 Hb_003198_010--Hb_000853_240 Hb_003198_010--Hb_001386_050 Hb_000032_350 Hb_000032_350 Hb_003198_010--Hb_000032_350 Hb_002802_020--Hb_032969_030 Hb_000069_700 Hb_000069_700 Hb_002802_020--Hb_000069_700 Hb_007218_150 Hb_007218_150 Hb_002802_020--Hb_007218_150 Hb_000111_100 Hb_000111_100 Hb_002802_020--Hb_000111_100 Hb_001235_110 Hb_001235_110 Hb_002802_020--Hb_001235_110 Hb_002802_020--Hb_003581_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.44445 2.11863 10.7493 5.80161 2.76404 5.9042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.8973 77.6154 35.9185 4.73638 7.44347

CAGE analysis