Hb_003185_020

Information

Type transcription factor
Description TF Family: GNAT
Location Contig3185: 6702-8859
Sequence    

Annotation

kegg
ID rcu:RCOM_1053840
description Pre-mRNA-splicing factor cwc24, putative
nr
ID XP_012076638.1
description PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
swissprot
ID Q9NHD5
description Probable N-acetyltransferase san OS=Drosophila melanogaster GN=san PE=1 SV=1
trembl
ID A0A067KBN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07207 PE=4 SV=1
Gene Ontology
ID GO:0008080
description n-alpha-acetyltransferase 50

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003185_020 0.0 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
2 Hb_010449_020 0.0639444509 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
3 Hb_004012_010 0.0736929809 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
4 Hb_157854_010 0.0811351764 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
5 Hb_002762_060 0.0825903807 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
6 Hb_000392_270 0.0951018022 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
7 Hb_004722_060 0.0951109858 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
8 Hb_026198_050 0.0956710819 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
9 Hb_006775_080 0.0964424043 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
10 Hb_024835_030 0.0969283496 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
11 Hb_002529_100 0.097225871 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
12 Hb_000732_260 0.0982696589 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
13 Hb_000282_060 0.0986937148 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
14 Hb_000768_050 0.0997201002 - - hypothetical protein RCOM_0845740 [Ricinus communis]
15 Hb_003688_100 0.0999214624 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
16 Hb_005489_130 0.100138085 - - calmodulin, putative [Ricinus communis]
17 Hb_004920_040 0.1004735021 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
18 Hb_000023_230 0.1044937264 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
19 Hb_004607_140 0.1053098646 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
20 Hb_003106_070 0.1054160197 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]

Gene co-expression network

sample Hb_003185_020 Hb_003185_020 Hb_010449_020 Hb_010449_020 Hb_003185_020--Hb_010449_020 Hb_004012_010 Hb_004012_010 Hb_003185_020--Hb_004012_010 Hb_157854_010 Hb_157854_010 Hb_003185_020--Hb_157854_010 Hb_002762_060 Hb_002762_060 Hb_003185_020--Hb_002762_060 Hb_000392_270 Hb_000392_270 Hb_003185_020--Hb_000392_270 Hb_004722_060 Hb_004722_060 Hb_003185_020--Hb_004722_060 Hb_010449_020--Hb_000392_270 Hb_000768_050 Hb_000768_050 Hb_010449_020--Hb_000768_050 Hb_003688_100 Hb_003688_100 Hb_010449_020--Hb_003688_100 Hb_005489_130 Hb_005489_130 Hb_010449_020--Hb_005489_130 Hb_010449_020--Hb_004722_060 Hb_024835_030 Hb_024835_030 Hb_004012_010--Hb_024835_030 Hb_026198_050 Hb_026198_050 Hb_004012_010--Hb_026198_050 Hb_006775_080 Hb_006775_080 Hb_004012_010--Hb_006775_080 Hb_004920_040 Hb_004920_040 Hb_004012_010--Hb_004920_040 Hb_004012_010--Hb_002762_060 Hb_157854_010--Hb_002762_060 Hb_118977_020 Hb_118977_020 Hb_157854_010--Hb_118977_020 Hb_003086_020 Hb_003086_020 Hb_157854_010--Hb_003086_020 Hb_022250_040 Hb_022250_040 Hb_157854_010--Hb_022250_040 Hb_004607_140 Hb_004607_140 Hb_157854_010--Hb_004607_140 Hb_002762_060--Hb_024835_030 Hb_004221_010 Hb_004221_010 Hb_002762_060--Hb_004221_010 Hb_002762_060--Hb_004920_040 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_158092_070 Hb_158092_070 Hb_002762_060--Hb_158092_070 Hb_000977_080 Hb_000977_080 Hb_000392_270--Hb_000977_080 Hb_001369_650 Hb_001369_650 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_019962_030 Hb_019962_030 Hb_004722_060--Hb_019962_030 Hb_004722_060--Hb_003688_100 Hb_000265_150 Hb_000265_150 Hb_004722_060--Hb_000265_150 Hb_000538_020 Hb_000538_020 Hb_004722_060--Hb_000538_020 Hb_002495_070 Hb_002495_070 Hb_004722_060--Hb_002495_070 Hb_000621_080 Hb_000621_080 Hb_004722_060--Hb_000621_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.8321 23.1016 12.9514 7.34203 37.884 43.4089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.5661 52.8689 30.1105 12.9036 2.3889

CAGE analysis