Hb_003185_050

Information

Type -
Description -
Location Contig3185: 22299-24293
Sequence    

Annotation

kegg
ID gmx:100499881
description uncharacterized LOC100499881
nr
ID XP_012076630.1
description PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
swissprot
ID Q9C944
description Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1
trembl
ID A0A067KBV3
description Histone H2A OS=Jatropha curcas GN=JCGZ_07203 PE=3 SV=1
Gene Ontology
ID GO:0000786
description probable histone h2a variant 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33597: 24076-24254
cDNA
(Sanger)
(ID:Location)		 008_E08.ab1: 24076-24245

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003185_050 0.0 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
2 Hb_000349_290 0.0704191992 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
3 Hb_152910_020 0.0741367264 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
4 Hb_002374_390 0.0743663541 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
5 Hb_000905_180 0.0776843689 - - 60S ribosomal protein L31A [Hevea brasiliensis]
6 Hb_003326_020 0.0792066566 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
7 Hb_001016_090 0.0839781391 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
8 Hb_000181_300 0.0855276978 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
9 Hb_003579_030 0.092112969 - - phosphatase 2C family protein [Populus trichocarpa]
10 Hb_005883_100 0.0924690598 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
11 Hb_003994_040 0.0929148566 - - -
12 Hb_000236_150 0.0939023512 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
13 Hb_000881_080 0.0941442256 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000193_120 0.0944894281 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
15 Hb_007645_080 0.0952007554 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
16 Hb_032260_030 0.0952828277 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
17 Hb_001633_030 0.0962658757 - - -
18 Hb_001157_010 0.0974440364 - - deoxyhypusine synthase, putative [Ricinus communis]
19 Hb_000115_230 0.0979914099 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
20 Hb_005568_120 0.0981181777 - - Prephenate dehydratase [Hevea brasiliensis]

Gene co-expression network

sample Hb_003185_050 Hb_003185_050 Hb_000349_290 Hb_000349_290 Hb_003185_050--Hb_000349_290 Hb_152910_020 Hb_152910_020 Hb_003185_050--Hb_152910_020 Hb_002374_390 Hb_002374_390 Hb_003185_050--Hb_002374_390 Hb_000905_180 Hb_000905_180 Hb_003185_050--Hb_000905_180 Hb_003326_020 Hb_003326_020 Hb_003185_050--Hb_003326_020 Hb_001016_090 Hb_001016_090 Hb_003185_050--Hb_001016_090 Hb_001565_080 Hb_001565_080 Hb_000349_290--Hb_001565_080 Hb_000215_060 Hb_000215_060 Hb_000349_290--Hb_000215_060 Hb_000363_480 Hb_000363_480 Hb_000349_290--Hb_000363_480 Hb_000349_290--Hb_000905_180 Hb_011173_050 Hb_011173_050 Hb_000349_290--Hb_011173_050 Hb_001005_080 Hb_001005_080 Hb_152910_020--Hb_001005_080 Hb_029904_040 Hb_029904_040 Hb_152910_020--Hb_029904_040 Hb_007192_100 Hb_007192_100 Hb_152910_020--Hb_007192_100 Hb_000115_230 Hb_000115_230 Hb_152910_020--Hb_000115_230 Hb_050806_010 Hb_050806_010 Hb_152910_020--Hb_050806_010 Hb_000181_300 Hb_000181_300 Hb_002374_390--Hb_000181_300 Hb_002374_390--Hb_001016_090 Hb_000364_030 Hb_000364_030 Hb_002374_390--Hb_000364_030 Hb_005731_170 Hb_005731_170 Hb_002374_390--Hb_005731_170 Hb_002374_390--Hb_000905_180 Hb_000163_130 Hb_000163_130 Hb_000905_180--Hb_000163_130 Hb_000236_150 Hb_000236_150 Hb_000905_180--Hb_000236_150 Hb_000905_180--Hb_001016_090 Hb_005474_060 Hb_005474_060 Hb_000905_180--Hb_005474_060 Hb_001157_010 Hb_001157_010 Hb_003326_020--Hb_001157_010 Hb_000567_410 Hb_000567_410 Hb_003326_020--Hb_000567_410 Hb_001076_020 Hb_001076_020 Hb_003326_020--Hb_001076_020 Hb_000193_120 Hb_000193_120 Hb_003326_020--Hb_000193_120 Hb_000239_030 Hb_000239_030 Hb_003326_020--Hb_000239_030 Hb_032260_030 Hb_032260_030 Hb_001016_090--Hb_032260_030 Hb_148200_010 Hb_148200_010 Hb_001016_090--Hb_148200_010 Hb_002925_030 Hb_002925_030 Hb_001016_090--Hb_002925_030 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.85193 7.77106 4.08616 8.19777 6.56018 9.62268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3203 45.6334 32.3407 12.2841 7.606

CAGE analysis