Hb_003185_080

Information

Type rubber biosynthesis
Description Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase
Location Contig3185: 33576-39531
Sequence    

Annotation

kegg
ID rcu:RCOM_1053880
description 1-deoxyxylulose-5-phosphate synthase, putative (EC:2.2.1.7)
nr
ID XP_002514364.1
description 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
swissprot
ID O22567
description 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2
trembl
ID B9RK10
description 1-deoxyxylulose-5-phosphate synthase, putative OS=Ricinus communis GN=RCOM_1053880 PE=3 SV=1
Gene Ontology
ID GO:0008661
description probable 1-deoxy-d-xylulose-5-phosphate chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33599: 37590-39518 , PASA_asmbl_33600: 37913-39578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003185_080 0.0 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
2 Hb_006198_110 0.0878869355 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
3 Hb_000656_400 0.0900583271 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
4 Hb_003749_010 0.0914886825 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004117_010 0.0938062905 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
6 Hb_001235_190 0.0944521994 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
7 Hb_028995_040 0.0946824552 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
8 Hb_001552_020 0.0956785741 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
9 Hb_002486_040 0.0958691583 - - -
10 Hb_000109_090 0.0963851726 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
11 Hb_007590_050 0.0972999322 - - NudC domain-containing protein, putative [Ricinus communis]
12 Hb_181288_010 0.1011663165 - - rac-GTP binding protein, putative [Ricinus communis]
13 Hb_000987_120 0.1014772294 - - PREDICTED: protein SIEL [Jatropha curcas]
14 Hb_000915_160 0.1015030523 - - PREDICTED: histone H1 [Jatropha curcas]
15 Hb_004934_110 0.1017214217 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
16 Hb_001259_090 0.1018226625 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
17 Hb_000307_090 0.1018341622 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
18 Hb_002685_190 0.1027142777 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
19 Hb_004657_050 0.1033423743 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
20 Hb_001951_140 0.1058438211 - - PREDICTED: uncharacterized protein LOC105649757 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003185_080 Hb_003185_080 Hb_006198_110 Hb_006198_110 Hb_003185_080--Hb_006198_110 Hb_000656_400 Hb_000656_400 Hb_003185_080--Hb_000656_400 Hb_003749_010 Hb_003749_010 Hb_003185_080--Hb_003749_010 Hb_004117_010 Hb_004117_010 Hb_003185_080--Hb_004117_010 Hb_001235_190 Hb_001235_190 Hb_003185_080--Hb_001235_190 Hb_028995_040 Hb_028995_040 Hb_003185_080--Hb_028995_040 Hb_004751_020 Hb_004751_020 Hb_006198_110--Hb_004751_020 Hb_000853_420 Hb_000853_420 Hb_006198_110--Hb_000853_420 Hb_001259_090 Hb_001259_090 Hb_006198_110--Hb_001259_090 Hb_004657_050 Hb_004657_050 Hb_006198_110--Hb_004657_050 Hb_000866_270 Hb_000866_270 Hb_006198_110--Hb_000866_270 Hb_003126_080 Hb_003126_080 Hb_000656_400--Hb_003126_080 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_001226_160 Hb_001226_160 Hb_000656_400--Hb_001226_160 Hb_118707_030 Hb_118707_030 Hb_000656_400--Hb_118707_030 Hb_000656_400--Hb_001259_090 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110 Hb_003607_050 Hb_003607_050 Hb_003749_010--Hb_003607_050 Hb_001983_020 Hb_001983_020 Hb_003749_010--Hb_001983_020 Hb_001157_020 Hb_001157_020 Hb_003749_010--Hb_001157_020 Hb_002141_030 Hb_002141_030 Hb_003749_010--Hb_002141_030 Hb_004195_270 Hb_004195_270 Hb_003749_010--Hb_004195_270 Hb_000109_090 Hb_000109_090 Hb_004117_010--Hb_000109_090 Hb_026549_040 Hb_026549_040 Hb_004117_010--Hb_026549_040 Hb_008648_010 Hb_008648_010 Hb_004117_010--Hb_008648_010 Hb_003599_040 Hb_003599_040 Hb_004117_010--Hb_003599_040 Hb_000331_080 Hb_000331_080 Hb_004117_010--Hb_000331_080 Hb_008173_090 Hb_008173_090 Hb_001235_190--Hb_008173_090 Hb_001722_100 Hb_001722_100 Hb_001235_190--Hb_001722_100 Hb_002963_010 Hb_002963_010 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_000307_090 Hb_000307_090 Hb_001235_190--Hb_000307_090 Hb_002110_120 Hb_002110_120 Hb_001235_190--Hb_002110_120 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_028995_040--Hb_000866_270 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_028995_040--Hb_004657_050 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6954 17.6431 9.7439 8.85632 20.6121 17.258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.9807 37.8615 15.3504 10.1607 12.9459

CAGE analysis