Hb_003185_110

Information

Type -
Description -
Location Contig3185: 72212-75737
Sequence    

Annotation

kegg
ID egr:104437693
description cytochrome b-c1 complex subunit 7-2-like
nr
ID XP_010254318.1
description PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
swissprot
ID F4JWS8
description Cytochrome b-c1 complex subunit 7-2 OS=Arabidopsis thaliana GN=QCR7-2 PE=1 SV=1
trembl
ID U5FF52
description Cytochrome b-c1 complex subunit 7 OS=Populus trichocarpa GN=POPTR_0018s01370g PE=3 SV=1
Gene Ontology
ID GO:0005750
description cytochrome b-c1 complex subunit 7-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33604: 72179-75666 , PASA_asmbl_33605: 72187-76216
cDNA
(Sanger)
(ID:Location)		 026_B22.ab1: 72187-75491

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003185_110 0.0 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
2 Hb_003018_010 0.083237053 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
3 Hb_003053_010 0.0850826126 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
4 Hb_000260_550 0.086606543 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
5 Hb_007044_130 0.0896013979 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
6 Hb_126861_010 0.090227041 - - hypothetical protein M569_05914, partial [Genlisea aurea]
7 Hb_000236_390 0.0906406964 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
8 Hb_001141_140 0.0911811937 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
9 Hb_000025_620 0.0930599688 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
10 Hb_002783_270 0.0934648802 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
11 Hb_029510_020 0.0940476922 - - hypothetical protein JCGZ_06306 [Jatropha curcas]
12 Hb_002811_260 0.09504917 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
13 Hb_000529_030 0.0958321341 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_005773_060 0.0962124902 - - defender against cell death, putative [Ricinus communis]
15 Hb_003018_020 0.098007173 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
16 Hb_001016_150 0.0980791103 - - Rop1 [Hevea brasiliensis]
17 Hb_004453_170 0.09827004 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
18 Hb_002900_160 0.0992375042 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
19 Hb_001195_480 0.0997802799 - - cop9 complex subunit, putative [Ricinus communis]
20 Hb_003226_100 0.1005669202 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]

Gene co-expression network

sample Hb_003185_110 Hb_003185_110 Hb_003018_010 Hb_003018_010 Hb_003185_110--Hb_003018_010 Hb_003053_010 Hb_003053_010 Hb_003185_110--Hb_003053_010 Hb_000260_550 Hb_000260_550 Hb_003185_110--Hb_000260_550 Hb_007044_130 Hb_007044_130 Hb_003185_110--Hb_007044_130 Hb_126861_010 Hb_126861_010 Hb_003185_110--Hb_126861_010 Hb_000236_390 Hb_000236_390 Hb_003185_110--Hb_000236_390 Hb_003226_100 Hb_003226_100 Hb_003018_010--Hb_003226_100 Hb_000025_620 Hb_000025_620 Hb_003018_010--Hb_000025_620 Hb_000836_470 Hb_000836_470 Hb_003018_010--Hb_000836_470 Hb_002226_060 Hb_002226_060 Hb_003018_010--Hb_002226_060 Hb_000656_240 Hb_000656_240 Hb_003018_010--Hb_000656_240 Hb_000996_140 Hb_000996_140 Hb_003018_010--Hb_000996_140 Hb_006925_040 Hb_006925_040 Hb_003053_010--Hb_006925_040 Hb_001141_140 Hb_001141_140 Hb_003053_010--Hb_001141_140 Hb_003053_010--Hb_000025_620 Hb_000297_230 Hb_000297_230 Hb_003053_010--Hb_000297_230 Hb_001780_040 Hb_001780_040 Hb_003053_010--Hb_001780_040 Hb_000096_170 Hb_000096_170 Hb_000260_550--Hb_000096_170 Hb_000260_550--Hb_007044_130 Hb_004453_170 Hb_004453_170 Hb_000260_550--Hb_004453_170 Hb_000127_180 Hb_000127_180 Hb_000260_550--Hb_000127_180 Hb_002518_080 Hb_002518_080 Hb_000260_550--Hb_002518_080 Hb_124953_020 Hb_124953_020 Hb_000260_550--Hb_124953_020 Hb_002783_270 Hb_002783_270 Hb_007044_130--Hb_002783_270 Hb_007044_130--Hb_001141_140 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_003894_070 Hb_003894_070 Hb_007044_130--Hb_003894_070 Hb_007044_130--Hb_006925_040 Hb_153544_010 Hb_153544_010 Hb_126861_010--Hb_153544_010 Hb_004800_060 Hb_004800_060 Hb_126861_010--Hb_004800_060 Hb_126861_010--Hb_001141_140 Hb_139294_020 Hb_139294_020 Hb_126861_010--Hb_139294_020 Hb_003018_020 Hb_003018_020 Hb_126861_010--Hb_003018_020 Hb_000529_030 Hb_000529_030 Hb_000236_390--Hb_000529_030 Hb_001195_480 Hb_001195_480 Hb_000236_390--Hb_001195_480 Hb_000633_020 Hb_000633_020 Hb_000236_390--Hb_000633_020 Hb_000236_390--Hb_004453_170 Hb_000622_180 Hb_000622_180 Hb_000236_390--Hb_000622_180 Hb_001016_150 Hb_001016_150 Hb_000236_390--Hb_001016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.3628 28.3811 100.557 55.4472 60.3465 43.2749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.917 186.509 48.0987 45.5752 29.2633

CAGE analysis