Hb_003186_020

Information

Type -
Description -
Location Contig3186: 42146-57906
Sequence    

Annotation

kegg
ID rcu:RCOM_1617710
description histone deacetylase hda1, putative
nr
ID XP_012092969.1
description PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
swissprot
ID Q8GXJ1
description Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=2
trembl
ID A0A067J8K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05860 PE=4 SV=1
Gene Ontology
ID GO:0008270
description histone deacetylase 15 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33608: 42242-44477 , PASA_asmbl_33609: 55778-56236 , PASA_asmbl_33610: 44478-57851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003186_020 0.0 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
2 Hb_000373_080 0.0491074424 - - PREDICTED: serine decarboxylase [Jatropha curcas]
3 Hb_000457_230 0.0517199038 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
4 Hb_000175_410 0.053599513 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
5 Hb_031284_010 0.0548816107 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
6 Hb_000214_050 0.0558117822 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
7 Hb_000115_280 0.0562598408 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
8 Hb_138435_010 0.0588475396 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
9 Hb_000254_100 0.0632690908 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
10 Hb_001005_030 0.0637412685 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
11 Hb_000362_170 0.0642831772 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
12 Hb_008059_010 0.0662821766 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
13 Hb_000836_410 0.0664702447 - - sec10, putative [Ricinus communis]
14 Hb_002811_270 0.0665355722 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
15 Hb_011972_020 0.0667193641 - - protein binding protein, putative [Ricinus communis]
16 Hb_000567_070 0.0671265458 - - autophagy protein, putative [Ricinus communis]
17 Hb_001377_110 0.0677887159 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
18 Hb_000610_040 0.0680539543 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
19 Hb_000390_230 0.0684881522 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
20 Hb_053079_020 0.0690099346 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003186_020 Hb_003186_020 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_000457_230 Hb_000457_230 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_031284_010 Hb_031284_010 Hb_003186_020--Hb_031284_010 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_001377_310 Hb_001377_310 Hb_000373_080--Hb_001377_310 Hb_001005_030 Hb_001005_030 Hb_000373_080--Hb_001005_030 Hb_000373_080--Hb_000214_050 Hb_000362_170 Hb_000362_170 Hb_000373_080--Hb_000362_170 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_003093_040 Hb_003093_040 Hb_000175_410--Hb_003093_040 Hb_013358_070 Hb_013358_070 Hb_000175_410--Hb_013358_070 Hb_000175_410--Hb_031284_010 Hb_000011_270 Hb_000011_270 Hb_000175_410--Hb_000011_270 Hb_000523_080 Hb_000523_080 Hb_000175_410--Hb_000523_080 Hb_008059_010 Hb_008059_010 Hb_031284_010--Hb_008059_010 Hb_031284_010--Hb_000115_280 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_000120_210 Hb_000120_210 Hb_031284_010--Hb_000120_210 Hb_031284_010--Hb_000457_230 Hb_002326_040 Hb_002326_040 Hb_000214_050--Hb_002326_040 Hb_002811_270 Hb_002811_270 Hb_000214_050--Hb_002811_270 Hb_001518_080 Hb_001518_080 Hb_000214_050--Hb_001518_080 Hb_000214_050--Hb_001377_310 Hb_000115_280--Hb_008059_010 Hb_000390_230 Hb_000390_230 Hb_000115_280--Hb_000390_230 Hb_053079_020 Hb_053079_020 Hb_000115_280--Hb_053079_020 Hb_000115_280--Hb_000457_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7375 11.3332 18.4598 11.632 12.0708 12.6872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.45434 7.2722 7.17626 11.5734 14.6888

CAGE analysis