Hb_003186_030

Information

Type transcription factor
Description TF Family: MYB
Location Contig3186: 67787-69236
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05720g
description hypothetical protein
nr
ID XP_006376751.1
description hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID U5FTN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05720g PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor divaricata

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33613: 67820-69283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003186_030 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
2 Hb_004452_070 0.0430921053 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
3 Hb_000251_150 0.0530064879 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_006132_080 0.0535350574 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
5 Hb_001191_060 0.0563014837 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
6 Hb_003033_020 0.0578143675 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
7 Hb_001348_160 0.0614829945 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_031862_220 0.0654153763 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
9 Hb_001049_130 0.0655791188 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
10 Hb_000046_400 0.0664039316 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001053_070 0.0671785527 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
12 Hb_000012_370 0.0692819525 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000979_120 0.0706210332 - - Pectinesterase-1 precursor, putative [Ricinus communis]
14 Hb_000987_030 0.0712534816 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
15 Hb_029879_020 0.071342133 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
16 Hb_000179_010 0.0728311734 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
17 Hb_000373_210 0.0739794502 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
18 Hb_001936_100 0.076580977 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002809_030 0.0787325938 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004899_190 0.0799119692 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]

Gene co-expression network

sample Hb_003186_030 Hb_003186_030 Hb_004452_070 Hb_004452_070 Hb_003186_030--Hb_004452_070 Hb_000251_150 Hb_000251_150 Hb_003186_030--Hb_000251_150 Hb_006132_080 Hb_006132_080 Hb_003186_030--Hb_006132_080 Hb_001191_060 Hb_001191_060 Hb_003186_030--Hb_001191_060 Hb_003033_020 Hb_003033_020 Hb_003186_030--Hb_003033_020 Hb_001348_160 Hb_001348_160 Hb_003186_030--Hb_001348_160 Hb_004452_070--Hb_000251_150 Hb_004452_070--Hb_006132_080 Hb_001936_100 Hb_001936_100 Hb_004452_070--Hb_001936_100 Hb_001049_130 Hb_001049_130 Hb_004452_070--Hb_001049_130 Hb_000703_340 Hb_000703_340 Hb_004452_070--Hb_000703_340 Hb_000987_030 Hb_000987_030 Hb_000251_150--Hb_000987_030 Hb_000046_400 Hb_000046_400 Hb_000251_150--Hb_000046_400 Hb_005743_050 Hb_005743_050 Hb_000251_150--Hb_005743_050 Hb_029879_020 Hb_029879_020 Hb_000251_150--Hb_029879_020 Hb_000179_010 Hb_000179_010 Hb_000251_150--Hb_000179_010 Hb_002121_050 Hb_002121_050 Hb_006132_080--Hb_002121_050 Hb_006132_080--Hb_000251_150 Hb_006132_080--Hb_000179_010 Hb_011724_040 Hb_011724_040 Hb_006132_080--Hb_011724_040 Hb_001310_020 Hb_001310_020 Hb_001191_060--Hb_001310_020 Hb_001191_060--Hb_001348_160 Hb_001269_480 Hb_001269_480 Hb_001191_060--Hb_001269_480 Hb_000012_370 Hb_000012_370 Hb_001191_060--Hb_000012_370 Hb_002818_130 Hb_002818_130 Hb_001191_060--Hb_002818_130 Hb_001191_060--Hb_003033_020 Hb_006573_240 Hb_006573_240 Hb_003033_020--Hb_006573_240 Hb_010697_020 Hb_010697_020 Hb_003033_020--Hb_010697_020 Hb_003787_030 Hb_003787_030 Hb_003033_020--Hb_003787_030 Hb_000307_100 Hb_000307_100 Hb_003033_020--Hb_000307_100 Hb_001348_160--Hb_010697_020 Hb_002809_030 Hb_002809_030 Hb_001348_160--Hb_002809_030 Hb_001348_160--Hb_001269_480 Hb_031862_220 Hb_031862_220 Hb_001348_160--Hb_031862_220 Hb_000373_210 Hb_000373_210 Hb_001348_160--Hb_000373_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0397665 0.357751 25.3892 16.3838 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.469936 64.2413

CAGE analysis