Hb_003186_040

Information

Type -
Description -
Location Contig3186: 74744-86845
Sequence    

Annotation

kegg
ID rcu:RCOM_1617730
description hypothetical protein
nr
ID XP_012092966.1
description PREDICTED: protein DENND6A [Jatropha curcas]
swissprot
ID Q54VA9
description Protein DENND6 homolog OS=Dictyostelium discoideum GN=DDB_G0280481 PE=3 SV=1
trembl
ID A0A067JBI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05857 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)
PASA_asmbl_33614: 74696-79322 , PASA_asmbl_33615: 86234-86662
cDNA
(Sanger)
(ID:Location)
-

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003186_040 0.0 - - PREDICTED: protein DENND6A [Jatropha curcas]
2 Hb_000022_140 0.1718986344 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
3 Hb_001085_210 0.1775350988 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
4 Hb_008803_040 0.1786503665 - - PREDICTED: uncharacterized protein LOC105157106 [Sesamum indicum]
5 Hb_000058_080 0.1849251719 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_002811_190 0.1862873479 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
7 Hb_002226_050 0.1869138321 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
8 Hb_139848_010 0.1879118375 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
9 Hb_000640_260 0.1927318451 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
10 Hb_001811_080 0.1928555359 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
11 Hb_002360_030 0.1928697626 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
12 Hb_012404_080 0.1954252626 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
13 Hb_173808_010 0.1972230839 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
14 Hb_000683_080 0.1979462175 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
15 Hb_003226_190 0.1981948783 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
16 Hb_021313_010 0.2012147941 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
17 Hb_001341_020 0.2015986915 - - Uncharacterised protein [Bordetella pertussis]
18 Hb_000739_210 0.2037829608 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
19 Hb_000495_080 0.2055724991 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
20 Hb_006700_040 0.2058441853 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_003186_040 Hb_003186_040 Hb_000022_140 Hb_000022_140 Hb_003186_040--Hb_000022_140 Hb_001085_210 Hb_001085_210 Hb_003186_040--Hb_001085_210 Hb_008803_040 Hb_008803_040 Hb_003186_040--Hb_008803_040 Hb_000058_080 Hb_000058_080 Hb_003186_040--Hb_000058_080 Hb_002811_190 Hb_002811_190 Hb_003186_040--Hb_002811_190 Hb_002226_050 Hb_002226_050 Hb_003186_040--Hb_002226_050 Hb_000529_140 Hb_000529_140 Hb_000022_140--Hb_000529_140 Hb_000404_040 Hb_000404_040 Hb_000022_140--Hb_000404_040 Hb_005523_010 Hb_005523_010 Hb_000022_140--Hb_005523_010 Hb_000739_210 Hb_000739_210 Hb_000022_140--Hb_000739_210 Hb_001341_020 Hb_001341_020 Hb_000022_140--Hb_001341_020 Hb_185058_020 Hb_185058_020 Hb_001085_210--Hb_185058_020 Hb_013691_050 Hb_013691_050 Hb_001085_210--Hb_013691_050 Hb_001096_020 Hb_001096_020 Hb_001085_210--Hb_001096_020 Hb_069147_010 Hb_069147_010 Hb_001085_210--Hb_069147_010 Hb_142570_010 Hb_142570_010 Hb_001085_210--Hb_142570_010 Hb_000705_250 Hb_000705_250 Hb_008803_040--Hb_000705_250 Hb_026698_030 Hb_026698_030 Hb_008803_040--Hb_026698_030 Hb_008803_040--Hb_000404_040 Hb_008803_040--Hb_000022_140 Hb_173808_010 Hb_173808_010 Hb_008803_040--Hb_173808_010 Hb_000866_050 Hb_000866_050 Hb_000058_080--Hb_000866_050 Hb_001792_030 Hb_001792_030 Hb_000058_080--Hb_001792_030 Hb_158144_020 Hb_158144_020 Hb_000058_080--Hb_158144_020 Hb_003581_290 Hb_003581_290 Hb_000058_080--Hb_003581_290 Hb_000594_100 Hb_000594_100 Hb_000058_080--Hb_000594_100 Hb_003124_120 Hb_003124_120 Hb_000058_080--Hb_003124_120 Hb_001425_010 Hb_001425_010 Hb_002811_190--Hb_001425_010 Hb_000977_150 Hb_000977_150 Hb_002811_190--Hb_000977_150 Hb_001405_080 Hb_001405_080 Hb_002811_190--Hb_001405_080 Hb_021409_190 Hb_021409_190 Hb_002811_190--Hb_021409_190 Hb_000640_260 Hb_000640_260 Hb_002811_190--Hb_000640_260 Hb_000329_080 Hb_000329_080 Hb_002811_190--Hb_000329_080 Hb_002639_110 Hb_002639_110 Hb_002226_050--Hb_002639_110 Hb_002226_050--Hb_001341_020 Hb_030131_030 Hb_030131_030 Hb_002226_050--Hb_030131_030 Hb_003089_020 Hb_003089_020 Hb_002226_050--Hb_003089_020 Hb_001223_010 Hb_001223_010 Hb_002226_050--Hb_001223_010 Hb_032258_010 Hb_032258_010 Hb_002226_050--Hb_032258_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0955866 0.196321 0.307798 0.223506 0.0149712 0.110198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.145849 0.114734 0.482324 0.837474 1.67004

CAGE analysis