Hb_003195_060

Information

Type -
Description -
Location Contig3195: 81369-84244
Sequence    

Annotation

kegg
ID pmum:103334761
description transmembrane protein 184 homolog DDB_G0279555
nr
ID XP_012067159.1
description PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
swissprot
ID F4JTN2
description Protein LAZ1 OS=Arabidopsis thaliana GN=LAZ1 PE=1 SV=1
trembl
ID A0A067LBZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03088 PE=4 SV=1
Gene Ontology
ID GO:0006816
description transmembrane protein 184 homolog ddb_g0279555-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33662: 81433-113766 , PASA_asmbl_33663: 81433-113766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003195_060 0.0 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
2 Hb_008511_050 0.074262381 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
3 Hb_002609_110 0.0767691455 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
4 Hb_003195_070 0.077156292 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_002811_360 0.0773343423 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
6 Hb_006332_010 0.0788762576 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
7 Hb_005754_060 0.0794341576 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007192_080 0.0795977463 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
9 Hb_000103_180 0.0828318161 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
10 Hb_000229_040 0.0842957196 - - Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
11 Hb_021409_020 0.0861418232 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]
12 Hb_000384_090 0.0867556496 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
13 Hb_004976_030 0.0869224491 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
14 Hb_023344_030 0.0872730261 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
15 Hb_005883_050 0.0885572417 - - PREDICTED: transportin-3 [Jatropha curcas]
16 Hb_001252_080 0.0888190767 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
17 Hb_071736_010 0.0889728653 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
18 Hb_000207_390 0.0920117253 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
19 Hb_002200_130 0.0927193218 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
20 Hb_004724_200 0.0935311657 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]

Gene co-expression network

sample Hb_003195_060 Hb_003195_060 Hb_008511_050 Hb_008511_050 Hb_003195_060--Hb_008511_050 Hb_002609_110 Hb_002609_110 Hb_003195_060--Hb_002609_110 Hb_003195_070 Hb_003195_070 Hb_003195_060--Hb_003195_070 Hb_002811_360 Hb_002811_360 Hb_003195_060--Hb_002811_360 Hb_006332_010 Hb_006332_010 Hb_003195_060--Hb_006332_010 Hb_005754_060 Hb_005754_060 Hb_003195_060--Hb_005754_060 Hb_007192_080 Hb_007192_080 Hb_008511_050--Hb_007192_080 Hb_008511_050--Hb_006332_010 Hb_002200_130 Hb_002200_130 Hb_008511_050--Hb_002200_130 Hb_050455_010 Hb_050455_010 Hb_008511_050--Hb_050455_010 Hb_023344_030 Hb_023344_030 Hb_008511_050--Hb_023344_030 Hb_000057_040 Hb_000057_040 Hb_002609_110--Hb_000057_040 Hb_001252_080 Hb_001252_080 Hb_002609_110--Hb_001252_080 Hb_002149_020 Hb_002149_020 Hb_002609_110--Hb_002149_020 Hb_004195_160 Hb_004195_160 Hb_002609_110--Hb_004195_160 Hb_182026_020 Hb_182026_020 Hb_002609_110--Hb_182026_020 Hb_000418_100 Hb_000418_100 Hb_002609_110--Hb_000418_100 Hb_002506_020 Hb_002506_020 Hb_003195_070--Hb_002506_020 Hb_000010_330 Hb_000010_330 Hb_003195_070--Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_003195_070--Hb_007904_200 Hb_048937_040 Hb_048937_040 Hb_003195_070--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_003195_070--Hb_004109_090 Hb_002200_080 Hb_002200_080 Hb_003195_070--Hb_002200_080 Hb_004724_200 Hb_004724_200 Hb_002811_360--Hb_004724_200 Hb_039837_010 Hb_039837_010 Hb_002811_360--Hb_039837_010 Hb_028872_140 Hb_028872_140 Hb_002811_360--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_002811_360--Hb_001454_210 Hb_000062_240 Hb_000062_240 Hb_002811_360--Hb_000062_240 Hb_001301_200 Hb_001301_200 Hb_002811_360--Hb_001301_200 Hb_004447_060 Hb_004447_060 Hb_006332_010--Hb_004447_060 Hb_007163_090 Hb_007163_090 Hb_006332_010--Hb_007163_090 Hb_148644_010 Hb_148644_010 Hb_006332_010--Hb_148644_010 Hb_006332_010--Hb_002811_360 Hb_004767_100 Hb_004767_100 Hb_006332_010--Hb_004767_100 Hb_006332_010--Hb_001301_200 Hb_009048_040 Hb_009048_040 Hb_005754_060--Hb_009048_040 Hb_071736_010 Hb_071736_010 Hb_005754_060--Hb_071736_010 Hb_005883_050 Hb_005883_050 Hb_005754_060--Hb_005883_050 Hb_000395_170 Hb_000395_170 Hb_005754_060--Hb_000395_170 Hb_000023_140 Hb_000023_140 Hb_005754_060--Hb_000023_140 Hb_005754_060--Hb_001454_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4553 9.53032 6.01596 16.9767 31.5772 45.7308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9698 21.0714 33.5926 14.1618 9.26326

CAGE analysis