Hb_003197_060

Information

Type -
Description -
Location Contig3197: 73180-76646
Sequence    

Annotation

kegg
ID pop:POPTR_0015s11900g
description POPTRDRAFT_575474; hypothetical protein
nr
ID XP_002321760.1
description hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9ICB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s11900g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003197_060 0.0 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
2 Hb_000920_070 0.2269871909 - - -
3 Hb_005439_010 0.2342339973 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
4 Hb_010810_070 0.2472175843 - - serine/threonine kinase, putative [Ricinus communis]
5 Hb_095835_010 0.2530591807 - - hypothetical protein JCGZ_23410 [Jatropha curcas]
6 Hb_155556_010 0.2559304097 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
7 Hb_001780_010 0.2643998355 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
8 Hb_012753_010 0.2649615287 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_001524_020 0.2696043218 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
10 Hb_041184_010 0.2729028083 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_033908_010 0.2737672538 - - -
12 Hb_006856_020 0.2740241539 - - -
13 Hb_005511_090 0.2742116569 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
14 Hb_115656_010 0.2814876951 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
15 Hb_185058_020 0.2826051186 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
16 Hb_020763_010 0.2833372533 - - polyamine oxidase, putative [Ricinus communis]
17 Hb_069147_010 0.2858819988 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
18 Hb_014324_010 0.2882649138 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
19 Hb_044380_020 0.2904151385 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_001086_030 0.2905654355 - - Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_003197_060 Hb_003197_060 Hb_000920_070 Hb_000920_070 Hb_003197_060--Hb_000920_070 Hb_005439_010 Hb_005439_010 Hb_003197_060--Hb_005439_010 Hb_010810_070 Hb_010810_070 Hb_003197_060--Hb_010810_070 Hb_095835_010 Hb_095835_010 Hb_003197_060--Hb_095835_010 Hb_155556_010 Hb_155556_010 Hb_003197_060--Hb_155556_010 Hb_001780_010 Hb_001780_010 Hb_003197_060--Hb_001780_010 Hb_000920_070--Hb_155556_010 Hb_000920_070--Hb_001780_010 Hb_000920_070--Hb_010810_070 Hb_001524_020 Hb_001524_020 Hb_000920_070--Hb_001524_020 Hb_000920_070--Hb_095835_010 Hb_057638_010 Hb_057638_010 Hb_000920_070--Hb_057638_010 Hb_043792_020 Hb_043792_020 Hb_005439_010--Hb_043792_020 Hb_001519_210 Hb_001519_210 Hb_005439_010--Hb_001519_210 Hb_128531_010 Hb_128531_010 Hb_005439_010--Hb_128531_010 Hb_159938_010 Hb_159938_010 Hb_005439_010--Hb_159938_010 Hb_005439_010--Hb_095835_010 Hb_005439_010--Hb_155556_010 Hb_003376_280 Hb_003376_280 Hb_010810_070--Hb_003376_280 Hb_003780_010 Hb_003780_010 Hb_010810_070--Hb_003780_010 Hb_000190_130 Hb_000190_130 Hb_010810_070--Hb_000190_130 Hb_093039_010 Hb_093039_010 Hb_010810_070--Hb_093039_010 Hb_000574_490 Hb_000574_490 Hb_010810_070--Hb_000574_490 Hb_095835_010--Hb_128531_010 Hb_004052_060 Hb_004052_060 Hb_095835_010--Hb_004052_060 Hb_095835_010--Hb_010810_070 Hb_095835_010--Hb_155556_010 Hb_155556_010--Hb_001780_010 Hb_012071_010 Hb_012071_010 Hb_155556_010--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_155556_010--Hb_012295_020 Hb_155556_010--Hb_001524_020 Hb_155556_010--Hb_001519_210 Hb_001780_010--Hb_001524_020 Hb_002774_010 Hb_002774_010 Hb_001780_010--Hb_002774_010 Hb_188487_010 Hb_188487_010 Hb_001780_010--Hb_188487_010 Hb_002092_040 Hb_002092_040 Hb_001780_010--Hb_002092_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0421124 0 0.0255234 0.1323 0.0351368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.226454 0.765874 0.755935

CAGE analysis