Hb_003197_070

Information

Type -
Description -
Location Contig3197: 80662-83647
Sequence    

Annotation

kegg
ID bvg:104884990
description uncharacterized LOC104884990
nr
ID XP_010668002.1
description PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID F4NCL3
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104884990

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003197_070 0.0 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
2 Hb_000108_060 0.1383037379 - - hypothetical protein POPTR_0010s07820g [Populus trichocarpa]
3 Hb_000302_350 0.2537963014 - - polygalacturonase, putative [Ricinus communis]
4 Hb_007432_010 0.2659573979 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
5 Hb_000111_440 0.321773838 - - -
6 Hb_000740_020 0.3328191305 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
7 Hb_001842_030 0.3443783373 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
8 Hb_000453_110 0.3504012747 - - PREDICTED: alkaline/neutral invertase CINV2-like isoform X1 [Citrus sinensis]
9 Hb_107429_010 0.3528111125 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
10 Hb_000035_280 0.3549343699 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
11 Hb_002397_060 0.3588763174 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000045_280 0.3590707623 - - hypothetical protein JCGZ_04076 [Jatropha curcas]
13 Hb_001437_160 0.3594187485 - - PREDICTED: high-affinity nitrate transporter 2.1-like [Jatropha curcas]
14 Hb_001329_170 0.3614669957 - - Chlorophyll a-b binding protein, chloroplastic [Aegilops tauschii]
15 Hb_051997_010 0.3658760863 - - -
16 Hb_007140_010 0.3692573462 - - -
17 Hb_172179_010 0.3693061287 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
18 Hb_000009_540 0.3800852678 - - hypothetical protein JCGZ_12303 [Jatropha curcas]
19 Hb_001226_010 0.3894598259 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
20 Hb_000186_270 0.3921272246 - - hypothetical protein JCGZ_02112 [Jatropha curcas]

Gene co-expression network

sample Hb_003197_070 Hb_003197_070 Hb_000108_060 Hb_000108_060 Hb_003197_070--Hb_000108_060 Hb_000302_350 Hb_000302_350 Hb_003197_070--Hb_000302_350 Hb_007432_010 Hb_007432_010 Hb_003197_070--Hb_007432_010 Hb_000111_440 Hb_000111_440 Hb_003197_070--Hb_000111_440 Hb_000740_020 Hb_000740_020 Hb_003197_070--Hb_000740_020 Hb_001842_030 Hb_001842_030 Hb_003197_070--Hb_001842_030 Hb_000108_060--Hb_000302_350 Hb_000108_060--Hb_007432_010 Hb_000108_060--Hb_000111_440 Hb_183671_010 Hb_183671_010 Hb_000108_060--Hb_183671_010 Hb_002397_060 Hb_002397_060 Hb_000108_060--Hb_002397_060 Hb_146902_010 Hb_146902_010 Hb_000302_350--Hb_146902_010 Hb_001541_220 Hb_001541_220 Hb_000302_350--Hb_001541_220 Hb_000116_200 Hb_000116_200 Hb_000302_350--Hb_000116_200 Hb_000302_350--Hb_000111_440 Hb_007432_010--Hb_000111_440 Hb_000663_070 Hb_000663_070 Hb_007432_010--Hb_000663_070 Hb_051997_010 Hb_051997_010 Hb_007432_010--Hb_051997_010 Hb_004163_020 Hb_004163_020 Hb_007432_010--Hb_004163_020 Hb_008971_030 Hb_008971_030 Hb_000111_440--Hb_008971_030 Hb_007382_090 Hb_007382_090 Hb_000111_440--Hb_007382_090 Hb_003740_030 Hb_003740_030 Hb_000111_440--Hb_003740_030 Hb_005332_130 Hb_005332_130 Hb_000111_440--Hb_005332_130 Hb_000111_440--Hb_051997_010 Hb_107429_010 Hb_107429_010 Hb_000740_020--Hb_107429_010 Hb_001437_160 Hb_001437_160 Hb_000740_020--Hb_001437_160 Hb_001226_010 Hb_001226_010 Hb_000740_020--Hb_001226_010 Hb_000836_150 Hb_000836_150 Hb_000740_020--Hb_000836_150 Hb_001143_150 Hb_001143_150 Hb_000740_020--Hb_001143_150 Hb_000917_170 Hb_000917_170 Hb_000740_020--Hb_000917_170 Hb_062038_010 Hb_062038_010 Hb_001842_030--Hb_062038_010 Hb_000612_040 Hb_000612_040 Hb_001842_030--Hb_000612_040 Hb_007553_020 Hb_007553_020 Hb_001842_030--Hb_007553_020 Hb_002631_300 Hb_002631_300 Hb_001842_030--Hb_002631_300 Hb_000155_090 Hb_000155_090 Hb_001842_030--Hb_000155_090 Hb_002686_180 Hb_002686_180 Hb_001842_030--Hb_002686_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.013589 0 0.0171459 0.0163604 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0195934 0 0 0

CAGE analysis