Hb_003198_030

Information

Type -
Description -
Location Contig3198: 87724-90894
Sequence    

Annotation

kegg
ID brp:103836066
description valine--tRNA ligase-like
nr
ID XP_012078515.1
description PREDICTED: valine--tRNA ligase [Jatropha curcas]
swissprot
ID P93736
description Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=2 SV=2
trembl
ID A0A067K8S9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13191 PE=3 SV=1
Gene Ontology
ID GO:0005829
description valine--trna ligase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003198_030 0.0 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
2 Hb_000086_230 0.1463146726 - - serine/threonine-protein kinase, putative [Ricinus communis]
3 Hb_002346_010 0.1544929403 - - -
4 Hb_000679_060 0.1704865273 - - ADP,ATP carrier protein, putative [Ricinus communis]
5 Hb_003064_020 0.1707296297 - - hypothetical protein JCGZ_21649 [Jatropha curcas]
6 Hb_000589_120 0.1786158159 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
7 Hb_002542_040 0.1819576719 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
8 Hb_000457_100 0.1848644536 - - prohibitin, putative [Ricinus communis]
9 Hb_001810_030 0.1852880772 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
10 Hb_000264_210 0.1871455365 - - tfiih, polypeptide, putative [Ricinus communis]
11 Hb_004787_110 0.1873110638 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002163_050 0.1882931419 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
13 Hb_000286_070 0.1889210361 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
14 Hb_000107_030 0.1901924162 - - conserved hypothetical protein [Ricinus communis]
15 Hb_142321_010 0.1906962656 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
16 Hb_000002_310 0.1918199113 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
17 Hb_000185_050 0.1956742324 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
18 Hb_007576_080 0.1972520205 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
19 Hb_001329_290 0.1978245117 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
20 Hb_000139_420 0.1983240225 - - Stem-specific protein TSJT1, putative [Ricinus communis]

Gene co-expression network

sample Hb_003198_030 Hb_003198_030 Hb_000086_230 Hb_000086_230 Hb_003198_030--Hb_000086_230 Hb_002346_010 Hb_002346_010 Hb_003198_030--Hb_002346_010 Hb_000679_060 Hb_000679_060 Hb_003198_030--Hb_000679_060 Hb_003064_020 Hb_003064_020 Hb_003198_030--Hb_003064_020 Hb_000589_120 Hb_000589_120 Hb_003198_030--Hb_000589_120 Hb_002542_040 Hb_002542_040 Hb_003198_030--Hb_002542_040 Hb_001691_140 Hb_001691_140 Hb_000086_230--Hb_001691_140 Hb_000086_230--Hb_003064_020 Hb_000084_160 Hb_000084_160 Hb_000086_230--Hb_000084_160 Hb_000099_150 Hb_000099_150 Hb_000086_230--Hb_000099_150 Hb_000086_230--Hb_000589_120 Hb_001828_060 Hb_001828_060 Hb_000086_230--Hb_001828_060 Hb_004787_110 Hb_004787_110 Hb_002346_010--Hb_004787_110 Hb_000457_100 Hb_000457_100 Hb_002346_010--Hb_000457_100 Hb_007576_080 Hb_007576_080 Hb_002346_010--Hb_007576_080 Hb_000676_260 Hb_000676_260 Hb_002346_010--Hb_000676_260 Hb_002585_040 Hb_002585_040 Hb_002346_010--Hb_002585_040 Hb_002320_040 Hb_002320_040 Hb_002346_010--Hb_002320_040 Hb_002217_510 Hb_002217_510 Hb_000679_060--Hb_002217_510 Hb_002338_020 Hb_002338_020 Hb_000679_060--Hb_002338_020 Hb_000589_260 Hb_000589_260 Hb_000679_060--Hb_000589_260 Hb_007423_040 Hb_007423_040 Hb_000679_060--Hb_007423_040 Hb_017002_020 Hb_017002_020 Hb_000679_060--Hb_017002_020 Hb_000010_250 Hb_000010_250 Hb_000679_060--Hb_000010_250 Hb_008554_060 Hb_008554_060 Hb_003064_020--Hb_008554_060 Hb_011512_070 Hb_011512_070 Hb_003064_020--Hb_011512_070 Hb_002226_060 Hb_002226_060 Hb_003064_020--Hb_002226_060 Hb_003052_190 Hb_003052_190 Hb_003064_020--Hb_003052_190 Hb_003064_020--Hb_000589_120 Hb_003942_020 Hb_003942_020 Hb_003064_020--Hb_003942_020 Hb_000684_380 Hb_000684_380 Hb_000589_120--Hb_000684_380 Hb_014109_040 Hb_014109_040 Hb_000589_120--Hb_014109_040 Hb_000589_120--Hb_008554_060 Hb_000589_120--Hb_007576_080 Hb_000417_130 Hb_000417_130 Hb_000589_120--Hb_000417_130 Hb_000905_110 Hb_000905_110 Hb_000589_120--Hb_000905_110 Hb_001953_070 Hb_001953_070 Hb_002542_040--Hb_001953_070 Hb_007533_010 Hb_007533_010 Hb_002542_040--Hb_007533_010 Hb_002163_050 Hb_002163_050 Hb_002542_040--Hb_002163_050 Hb_000010_110 Hb_000010_110 Hb_002542_040--Hb_000010_110 Hb_001623_270 Hb_001623_270 Hb_002542_040--Hb_001623_270 Hb_012340_090 Hb_012340_090 Hb_002542_040--Hb_012340_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.14688 1.68367 3.41388 0.95994 3.40573 0.337965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50166 4.72245 1.05955 3.45078 1.29251

CAGE analysis