Hb_003203_040

Information

Type -
Description -
Location Contig3203: 14444-19814
Sequence    

Annotation

kegg
ID vvi:100258782
description transcription initiation factor TFIID subunit 7
nr
ID XP_010651371.1
description PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
swissprot
ID B9DG24
description Transcription initiation factor TFIID subunit 7 OS=Arabidopsis thaliana GN=TAF7 PE=1 SV=1
trembl
ID B9GLF9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04340g PE=4 SV=2
Gene Ontology
ID GO:0005669
description transcription initiation factor tfiid subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33850: 14442-18902 , PASA_asmbl_33851: 16657-17032 , PASA_asmbl_33853: 14521-18976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003203_040 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
2 Hb_001141_030 0.0512084306 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
3 Hb_011628_040 0.0591889032 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
4 Hb_003893_050 0.0617961737 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
5 Hb_010672_070 0.0738098752 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
6 Hb_005511_160 0.0740011536 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
7 Hb_005063_050 0.0778472463 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
8 Hb_000441_190 0.0786884369 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
9 Hb_001505_020 0.0791297448 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
10 Hb_076626_010 0.0797993704 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000029_200 0.080730839 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
12 Hb_002217_450 0.0812945814 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
13 Hb_003455_040 0.0816211961 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
14 Hb_001863_400 0.0838304995 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
15 Hb_003994_040 0.0843409789 - - -
16 Hb_005181_030 0.0847328493 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
17 Hb_000086_070 0.0874160255 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
18 Hb_002864_050 0.0886801063 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
19 Hb_003734_140 0.0896240975 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012753_160 0.0896247589 - - ara4-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003203_040 Hb_003203_040 Hb_001141_030 Hb_001141_030 Hb_003203_040--Hb_001141_030 Hb_011628_040 Hb_011628_040 Hb_003203_040--Hb_011628_040 Hb_003893_050 Hb_003893_050 Hb_003203_040--Hb_003893_050 Hb_010672_070 Hb_010672_070 Hb_003203_040--Hb_010672_070 Hb_005511_160 Hb_005511_160 Hb_003203_040--Hb_005511_160 Hb_005063_050 Hb_005063_050 Hb_003203_040--Hb_005063_050 Hb_001109_020 Hb_001109_020 Hb_001141_030--Hb_001109_020 Hb_001143_080 Hb_001143_080 Hb_001141_030--Hb_001143_080 Hb_003455_040 Hb_003455_040 Hb_001141_030--Hb_003455_040 Hb_012753_160 Hb_012753_160 Hb_001141_030--Hb_012753_160 Hb_003994_040 Hb_003994_040 Hb_001141_030--Hb_003994_040 Hb_011628_040--Hb_005511_160 Hb_011628_040--Hb_003893_050 Hb_001505_020 Hb_001505_020 Hb_011628_040--Hb_001505_020 Hb_001214_160 Hb_001214_160 Hb_011628_040--Hb_001214_160 Hb_011628_040--Hb_005063_050 Hb_003893_050--Hb_005063_050 Hb_000283_110 Hb_000283_110 Hb_003893_050--Hb_000283_110 Hb_002431_050 Hb_002431_050 Hb_003893_050--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_003893_050--Hb_010672_060 Hb_000029_200 Hb_000029_200 Hb_003893_050--Hb_000029_200 Hb_076626_010 Hb_076626_010 Hb_010672_070--Hb_076626_010 Hb_005590_020 Hb_005590_020 Hb_010672_070--Hb_005590_020 Hb_002999_050 Hb_002999_050 Hb_010672_070--Hb_002999_050 Hb_010672_070--Hb_003455_040 Hb_000933_160 Hb_000933_160 Hb_010672_070--Hb_000933_160 Hb_002259_070 Hb_002259_070 Hb_005511_160--Hb_002259_070 Hb_001979_040 Hb_001979_040 Hb_005511_160--Hb_001979_040 Hb_003656_070 Hb_003656_070 Hb_005511_160--Hb_003656_070 Hb_007416_030 Hb_007416_030 Hb_005511_160--Hb_007416_030 Hb_008921_020 Hb_008921_020 Hb_005063_050--Hb_008921_020 Hb_005063_050--Hb_010672_060 Hb_000699_160 Hb_000699_160 Hb_005063_050--Hb_000699_160 Hb_000265_050 Hb_000265_050 Hb_005063_050--Hb_000265_050 Hb_143496_010 Hb_143496_010 Hb_005063_050--Hb_143496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.0765 6.63604 17.4633 19.5869 23.0353 37.099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.2225 103.034 51.7394 17.6854 13.4047

CAGE analysis