Hb_003206_020

Information

Type -
Description -
Location Contig3206: 31923-61885
Sequence    

Annotation

kegg
ID cmo:103487212
description putative vacuolar protein sorting-associated protein 13A
nr
ID XP_010661192.1
description PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
swissprot
ID Q555C6
description Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1
trembl
ID A0A067EH17
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0000282mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33862: 32522-33482 , PASA_asmbl_33863: 32786-33322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003206_020 0.0 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
2 Hb_020665_010 0.1288124623 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
3 Hb_007101_200 0.1420174827 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
4 Hb_145915_010 0.1445821483 - - PREDICTED: uncharacterized protein LOC105630963 [Jatropha curcas]
5 Hb_009270_010 0.1446445105 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
6 Hb_000136_040 0.1489828253 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
7 Hb_002276_060 0.1516267374 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
8 Hb_001009_100 0.1557039321 - - -
9 Hb_005181_110 0.1581185065 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
10 Hb_001912_080 0.1595142399 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]
11 Hb_001010_070 0.1621031889 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
12 Hb_188126_010 0.1628036278 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
13 Hb_000057_050 0.1658230679 - - hypothetical protein Csa_7G132920 [Cucumis sativus]
14 Hb_001117_170 0.1669031482 - - -
15 Hb_007805_010 0.1676890469 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
16 Hb_002419_030 0.1705119136 - - -
17 Hb_000170_190 0.171387925 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
18 Hb_000041_090 0.1731023412 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
19 Hb_006295_020 0.1745562975 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
20 Hb_002974_060 0.1778019604 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003206_020 Hb_003206_020 Hb_020665_010 Hb_020665_010 Hb_003206_020--Hb_020665_010 Hb_007101_200 Hb_007101_200 Hb_003206_020--Hb_007101_200 Hb_145915_010 Hb_145915_010 Hb_003206_020--Hb_145915_010 Hb_009270_010 Hb_009270_010 Hb_003206_020--Hb_009270_010 Hb_000136_040 Hb_000136_040 Hb_003206_020--Hb_000136_040 Hb_002276_060 Hb_002276_060 Hb_003206_020--Hb_002276_060 Hb_020665_010--Hb_145915_010 Hb_020665_010--Hb_009270_010 Hb_007922_020 Hb_007922_020 Hb_020665_010--Hb_007922_020 Hb_001010_070 Hb_001010_070 Hb_020665_010--Hb_001010_070 Hb_007317_140 Hb_007317_140 Hb_020665_010--Hb_007317_140 Hb_001005_050 Hb_001005_050 Hb_020665_010--Hb_001005_050 Hb_000832_130 Hb_000832_130 Hb_007101_200--Hb_000832_130 Hb_000951_110 Hb_000951_110 Hb_007101_200--Hb_000951_110 Hb_000959_090 Hb_000959_090 Hb_007101_200--Hb_000959_090 Hb_007101_200--Hb_000136_040 Hb_009543_020 Hb_009543_020 Hb_007101_200--Hb_009543_020 Hb_003170_040 Hb_003170_040 Hb_145915_010--Hb_003170_040 Hb_012286_010 Hb_012286_010 Hb_145915_010--Hb_012286_010 Hb_145915_010--Hb_009270_010 Hb_145915_010--Hb_002276_060 Hb_000661_030 Hb_000661_030 Hb_145915_010--Hb_000661_030 Hb_001117_170 Hb_001117_170 Hb_009270_010--Hb_001117_170 Hb_000005_190 Hb_000005_190 Hb_009270_010--Hb_000005_190 Hb_188126_010 Hb_188126_010 Hb_009270_010--Hb_188126_010 Hb_003498_130 Hb_003498_130 Hb_009270_010--Hb_003498_130 Hb_000136_060 Hb_000136_060 Hb_000136_040--Hb_000136_060 Hb_003623_030 Hb_003623_030 Hb_000136_040--Hb_003623_030 Hb_000470_080 Hb_000470_080 Hb_000136_040--Hb_000470_080 Hb_000743_050 Hb_000743_050 Hb_000136_040--Hb_000743_050 Hb_005205_020 Hb_005205_020 Hb_000136_040--Hb_005205_020 Hb_002028_170 Hb_002028_170 Hb_000136_040--Hb_002028_170 Hb_000170_190 Hb_000170_190 Hb_002276_060--Hb_000170_190 Hb_000034_040 Hb_000034_040 Hb_002276_060--Hb_000034_040 Hb_003001_150 Hb_003001_150 Hb_002276_060--Hb_003001_150 Hb_002276_060--Hb_012286_010 Hb_002193_010 Hb_002193_010 Hb_002276_060--Hb_002193_010 Hb_005181_110 Hb_005181_110 Hb_002276_060--Hb_005181_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38652 1.61197 0.326985 0.329665 3.34704 4.51837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40061 1.53151 1.58171 2.51842 4.59123

CAGE analysis