Hb_003206_030

Information

Type -
Description -
Location Contig3206: 72770-100662
Sequence    

Annotation

kegg
ID rcu:RCOM_0902510
description vacuolar protein sorting-associated protein, putative
nr
ID XP_012070481.1
description PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
swissprot
ID Q54LB8
description Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1
trembl
ID B9RXC4
description Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCOM_0902510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33866: 76466-78648 , PASA_asmbl_33867: 79509-79872 , PASA_asmbl_33868: 80455-80941 , PASA_asmbl_33869: 80979-81396 , PASA_asmbl_33870: 81423-87698 , PASA_asmbl_33871: 88422-99979 , PASA_asmbl_33872: 88422-99378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003206_030 0.0 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
2 Hb_000181_180 0.0809868632 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
3 Hb_000421_120 0.0901468531 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
4 Hb_002813_010 0.0972123544 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
5 Hb_030565_090 0.0973160769 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
6 Hb_002477_150 0.0979732912 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
7 Hb_000865_080 0.0996155986 - - arsenite-resistance protein, putative [Ricinus communis]
8 Hb_006185_020 0.1089025583 - - PREDICTED: midasin [Jatropha curcas]
9 Hb_076693_020 0.110481079 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
10 Hb_124677_060 0.1110963587 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_006316_070 0.1111827515 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
12 Hb_005946_170 0.1126136462 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
13 Hb_144824_010 0.1156506284 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
14 Hb_001157_180 0.1163308027 - - protein binding protein, putative [Ricinus communis]
15 Hb_023827_040 0.116853985 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
16 Hb_015026_070 0.1173964095 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
17 Hb_004970_150 0.1174410822 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
18 Hb_161072_030 0.1174931612 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
19 Hb_002745_010 0.1183790416 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
20 Hb_000363_130 0.1189213268 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003206_030 Hb_003206_030 Hb_000181_180 Hb_000181_180 Hb_003206_030--Hb_000181_180 Hb_000421_120 Hb_000421_120 Hb_003206_030--Hb_000421_120 Hb_002813_010 Hb_002813_010 Hb_003206_030--Hb_002813_010 Hb_030565_090 Hb_030565_090 Hb_003206_030--Hb_030565_090 Hb_002477_150 Hb_002477_150 Hb_003206_030--Hb_002477_150 Hb_000865_080 Hb_000865_080 Hb_003206_030--Hb_000865_080 Hb_000136_090 Hb_000136_090 Hb_000181_180--Hb_000136_090 Hb_012180_050 Hb_012180_050 Hb_000181_180--Hb_012180_050 Hb_000236_080 Hb_000236_080 Hb_000181_180--Hb_000236_080 Hb_001080_270 Hb_001080_270 Hb_000181_180--Hb_001080_270 Hb_001028_070 Hb_001028_070 Hb_000181_180--Hb_001028_070 Hb_000224_060 Hb_000224_060 Hb_000421_120--Hb_000224_060 Hb_000421_120--Hb_002813_010 Hb_000046_010 Hb_000046_010 Hb_000421_120--Hb_000046_010 Hb_000421_120--Hb_000865_080 Hb_076693_020 Hb_076693_020 Hb_000421_120--Hb_076693_020 Hb_001168_040 Hb_001168_040 Hb_000421_120--Hb_001168_040 Hb_005946_170 Hb_005946_170 Hb_002813_010--Hb_005946_170 Hb_002813_010--Hb_001080_270 Hb_002813_010--Hb_000865_080 Hb_002524_040 Hb_002524_040 Hb_002813_010--Hb_002524_040 Hb_004162_280 Hb_004162_280 Hb_002813_010--Hb_004162_280 Hb_000997_030 Hb_000997_030 Hb_030565_090--Hb_000997_030 Hb_000363_130 Hb_000363_130 Hb_030565_090--Hb_000363_130 Hb_000264_100 Hb_000264_100 Hb_030565_090--Hb_000264_100 Hb_034243_020 Hb_034243_020 Hb_030565_090--Hb_034243_020 Hb_033883_060 Hb_033883_060 Hb_030565_090--Hb_033883_060 Hb_031042_070 Hb_031042_070 Hb_030565_090--Hb_031042_070 Hb_011465_030 Hb_011465_030 Hb_002477_150--Hb_011465_030 Hb_148209_020 Hb_148209_020 Hb_002477_150--Hb_148209_020 Hb_002477_150--Hb_005946_170 Hb_000265_250 Hb_000265_250 Hb_002477_150--Hb_000265_250 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_001946_300 Hb_001946_300 Hb_002477_150--Hb_001946_300 Hb_000291_190 Hb_000291_190 Hb_000865_080--Hb_000291_190 Hb_000865_080--Hb_000224_060 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_000865_080--Hb_000025_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8766 17.6785 2.67582 2.51908 9.91007 13.6826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.73747 7.16105 3.06596 6.87418 4.59948

CAGE analysis