Hb_003206_070

Information

Type -
Description -
Location Contig3206: 139456-146419
Sequence    

Annotation

kegg
ID rcu:RCOM_0583090
description organic anion transporter, putative
nr
ID XP_002527697.1
description organic anion transporter, putative [Ricinus communis]
swissprot
ID Q8RXL8
description Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1
trembl
ID B9SNX8
description Organic anion transporter, putative OS=Ricinus communis GN=RCOM_0583090 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized membrane protein at1g06890-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33873: 139551-146134 , PASA_asmbl_33874: 144630-144848
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003206_070 0.0 - - organic anion transporter, putative [Ricinus communis]
2 Hb_000409_020 0.0555170415 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
3 Hb_001818_090 0.0756007899 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000676_250 0.0765399578 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
5 Hb_005663_060 0.0781983803 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
6 Hb_003177_030 0.0792488247 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
7 Hb_007441_120 0.082392887 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
8 Hb_000019_030 0.0827669358 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
9 Hb_000169_090 0.0858156754 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
10 Hb_004109_090 0.0859905664 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_002774_060 0.0861692229 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
12 Hb_000620_010 0.0876132731 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
13 Hb_005490_030 0.0879354974 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
14 Hb_011671_240 0.0887441651 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
15 Hb_000451_010 0.0889013157 - - secretory carrier membrane protein, putative [Ricinus communis]
16 Hb_000656_040 0.0918821564 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
17 Hb_004055_030 0.0921973912 - - casein kinase, putative [Ricinus communis]
18 Hb_003032_040 0.0937010835 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
19 Hb_000749_220 0.093721948 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
20 Hb_001454_130 0.0938886633 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003206_070 Hb_003206_070 Hb_000409_020 Hb_000409_020 Hb_003206_070--Hb_000409_020 Hb_001818_090 Hb_001818_090 Hb_003206_070--Hb_001818_090 Hb_000676_250 Hb_000676_250 Hb_003206_070--Hb_000676_250 Hb_005663_060 Hb_005663_060 Hb_003206_070--Hb_005663_060 Hb_003177_030 Hb_003177_030 Hb_003206_070--Hb_003177_030 Hb_007441_120 Hb_007441_120 Hb_003206_070--Hb_007441_120 Hb_000898_040 Hb_000898_040 Hb_000409_020--Hb_000898_040 Hb_004109_090 Hb_004109_090 Hb_000409_020--Hb_004109_090 Hb_000409_020--Hb_005663_060 Hb_002687_110 Hb_002687_110 Hb_000409_020--Hb_002687_110 Hb_002016_110 Hb_002016_110 Hb_000409_020--Hb_002016_110 Hb_061090_010 Hb_061090_010 Hb_001818_090--Hb_061090_010 Hb_003032_040 Hb_003032_040 Hb_001818_090--Hb_003032_040 Hb_001818_090--Hb_004109_090 Hb_001818_090--Hb_005663_060 Hb_001818_090--Hb_007441_120 Hb_000579_140 Hb_000579_140 Hb_001818_090--Hb_000579_140 Hb_000676_250--Hb_003177_030 Hb_023344_120 Hb_023344_120 Hb_000676_250--Hb_023344_120 Hb_027380_130 Hb_027380_130 Hb_000676_250--Hb_027380_130 Hb_000019_030 Hb_000019_030 Hb_000676_250--Hb_000019_030 Hb_001711_020 Hb_001711_020 Hb_000676_250--Hb_001711_020 Hb_005144_160 Hb_005144_160 Hb_000676_250--Hb_005144_160 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_006922_100 Hb_006922_100 Hb_005663_060--Hb_006922_100 Hb_005663_060--Hb_007441_120 Hb_005663_060--Hb_002016_110 Hb_000749_220 Hb_000749_220 Hb_003177_030--Hb_000749_220 Hb_001009_270 Hb_001009_270 Hb_003177_030--Hb_001009_270 Hb_003177_030--Hb_005144_160 Hb_001159_130 Hb_001159_130 Hb_003177_030--Hb_001159_130 Hb_003177_030--Hb_000019_030 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_000445_420 Hb_000445_420 Hb_007441_120--Hb_000445_420 Hb_004055_030 Hb_004055_030 Hb_007441_120--Hb_004055_030 Hb_007441_120--Hb_006922_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3746 2.9148 4.78481 8.75301 8.11392 11.5222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9989 7.83913 13.4875 6.51832 5.20853

CAGE analysis