Hb_003207_100

Information

Type transcription factor
Description TF Family: TCP
Location Contig3207: 122483-123745
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08590g
description POPTRDRAFT_548532; hypothetical protein
nr
ID XP_012087026.1
description PREDICTED: transcription factor TCP9-like [Jatropha curcas]
swissprot
ID O64647
description Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1
trembl
ID A0A067JNG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20682 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_100 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP9-like [Jatropha curcas]
2 Hb_002876_070 0.1152283968 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
3 Hb_006846_020 0.1373936727 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
4 Hb_007007_080 0.1415426458 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000272_110 0.1482416512 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
6 Hb_000038_040 0.1533627823 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
7 Hb_000069_330 0.1585645071 - - protein with unknown function [Ricinus communis]
8 Hb_000221_060 0.1606060574 - - -
9 Hb_000069_730 0.1610231127 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
10 Hb_161901_020 0.1653068976 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
11 Hb_001898_130 0.1679849643 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000364_040 0.1708857435 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
13 Hb_000086_620 0.1721320907 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
14 Hb_008020_020 0.1722640875 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
15 Hb_000045_260 0.1738263761 - - protein with unknown function [Ricinus communis]
16 Hb_004208_140 0.1740633834 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
17 Hb_000027_130 0.1755437896 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
18 Hb_003224_030 0.17776895 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
19 Hb_002477_120 0.1790539454 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
20 Hb_000776_050 0.1799226892 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]

Gene co-expression network

sample Hb_003207_100 Hb_003207_100 Hb_002876_070 Hb_002876_070 Hb_003207_100--Hb_002876_070 Hb_006846_020 Hb_006846_020 Hb_003207_100--Hb_006846_020 Hb_007007_080 Hb_007007_080 Hb_003207_100--Hb_007007_080 Hb_000272_110 Hb_000272_110 Hb_003207_100--Hb_000272_110 Hb_000038_040 Hb_000038_040 Hb_003207_100--Hb_000038_040 Hb_000069_330 Hb_000069_330 Hb_003207_100--Hb_000069_330 Hb_004586_130 Hb_004586_130 Hb_002876_070--Hb_004586_130 Hb_002876_070--Hb_000272_110 Hb_011930_120 Hb_011930_120 Hb_002876_070--Hb_011930_120 Hb_008020_020 Hb_008020_020 Hb_002876_070--Hb_008020_020 Hb_001246_160 Hb_001246_160 Hb_002876_070--Hb_001246_160 Hb_006846_020--Hb_000038_040 Hb_002477_120 Hb_002477_120 Hb_006846_020--Hb_002477_120 Hb_006846_020--Hb_007007_080 Hb_000107_440 Hb_000107_440 Hb_006846_020--Hb_000107_440 Hb_004208_140 Hb_004208_140 Hb_006846_020--Hb_004208_140 Hb_007007_080--Hb_000069_330 Hb_003224_030 Hb_003224_030 Hb_007007_080--Hb_003224_030 Hb_003752_120 Hb_003752_120 Hb_007007_080--Hb_003752_120 Hb_007007_080--Hb_002477_120 Hb_005496_160 Hb_005496_160 Hb_007007_080--Hb_005496_160 Hb_002154_020 Hb_002154_020 Hb_007007_080--Hb_002154_020 Hb_001085_300 Hb_001085_300 Hb_000272_110--Hb_001085_300 Hb_000272_110--Hb_007007_080 Hb_001318_150 Hb_001318_150 Hb_000272_110--Hb_001318_150 Hb_000272_110--Hb_001246_160 Hb_001898_130 Hb_001898_130 Hb_000272_110--Hb_001898_130 Hb_006935_010 Hb_006935_010 Hb_000038_040--Hb_006935_010 Hb_000038_040--Hb_000107_440 Hb_000038_040--Hb_007007_080 Hb_000776_050 Hb_000776_050 Hb_000038_040--Hb_000776_050 Hb_007382_100 Hb_007382_100 Hb_000038_040--Hb_007382_100 Hb_003077_050 Hb_003077_050 Hb_000069_330--Hb_003077_050 Hb_000009_200 Hb_000009_200 Hb_000069_330--Hb_000009_200 Hb_000069_330--Hb_001898_130 Hb_004117_170 Hb_004117_170 Hb_000069_330--Hb_004117_170 Hb_005714_100 Hb_005714_100 Hb_000069_330--Hb_005714_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.69922 35.4501 18.197 5.37443 0.690148 0.776794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25218 4.83455 3.75216 5.22781 6.23171

CAGE analysis