Hb_003207_150

Information

Type -
Description -
Location Contig3207: 167762-176027
Sequence    

Annotation

kegg
ID rcu:RCOM_1683290
description hypothetical protein
nr
ID XP_012087019.1
description PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
swissprot
ID Q93ZQ5
description SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2
trembl
ID B9RC11
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1683290 PE=4 SV=1
Gene Ontology
ID GO:0016021
description spx domain-containing membrane protein at4g22990-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33908: 167796-175949 , PASA_asmbl_33909: 167796-174841 , PASA_asmbl_33910: 168439-168602 , PASA_asmbl_33911: 169480-169792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_150 0.0 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
2 Hb_000177_110 0.0812404747 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
3 Hb_053709_040 0.1056169173 - - putative actin-97 protein [Linum usitatissimum]
4 Hb_034726_010 0.1145018738 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_001366_170 0.1259422669 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
6 Hb_000671_130 0.1260185057 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
7 Hb_122636_010 0.1266982728 - - dienelactone hydrolase family protein [Populus trichocarpa]
8 Hb_147245_010 0.1344632215 - - casein kinase, putative [Ricinus communis]
9 Hb_032143_020 0.1367424248 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]
10 Hb_006351_020 0.1392067829 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
11 Hb_001369_630 0.1397942479 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
12 Hb_000246_130 0.1426651929 - - tubulin alpha chain, putative [Ricinus communis]
13 Hb_104571_010 0.1471174511 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
14 Hb_000935_040 0.1476442133 - - Uncharacterized protein isoform 2 [Theobroma cacao]
15 Hb_007483_060 0.1484856689 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
16 Hb_000424_030 0.1489729167 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000008_190 0.1501038259 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
18 Hb_000098_170 0.1501176028 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
19 Hb_001847_050 0.1530231159 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
20 Hb_028639_030 0.1533727808 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003207_150 Hb_003207_150 Hb_000177_110 Hb_000177_110 Hb_003207_150--Hb_000177_110 Hb_053709_040 Hb_053709_040 Hb_003207_150--Hb_053709_040 Hb_034726_010 Hb_034726_010 Hb_003207_150--Hb_034726_010 Hb_001366_170 Hb_001366_170 Hb_003207_150--Hb_001366_170 Hb_000671_130 Hb_000671_130 Hb_003207_150--Hb_000671_130 Hb_122636_010 Hb_122636_010 Hb_003207_150--Hb_122636_010 Hb_000177_110--Hb_034726_010 Hb_000424_030 Hb_000424_030 Hb_000177_110--Hb_000424_030 Hb_007483_060 Hb_007483_060 Hb_000177_110--Hb_007483_060 Hb_002217_500 Hb_002217_500 Hb_000177_110--Hb_002217_500 Hb_000177_110--Hb_000671_130 Hb_053709_040--Hb_001366_170 Hb_053709_040--Hb_034726_010 Hb_008185_020 Hb_008185_020 Hb_053709_040--Hb_008185_020 Hb_007632_100 Hb_007632_100 Hb_053709_040--Hb_007632_100 Hb_053709_040--Hb_000177_110 Hb_001369_630 Hb_001369_630 Hb_034726_010--Hb_001369_630 Hb_001102_160 Hb_001102_160 Hb_034726_010--Hb_001102_160 Hb_034726_010--Hb_001366_170 Hb_001902_200 Hb_001902_200 Hb_001366_170--Hb_001902_200 Hb_002490_030 Hb_002490_030 Hb_001366_170--Hb_002490_030 Hb_006351_020 Hb_006351_020 Hb_001366_170--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001366_170--Hb_004032_210 Hb_000671_130--Hb_122636_010 Hb_091349_010 Hb_091349_010 Hb_000671_130--Hb_091349_010 Hb_003207_020 Hb_003207_020 Hb_000671_130--Hb_003207_020 Hb_033152_070 Hb_033152_070 Hb_000671_130--Hb_033152_070 Hb_000107_110 Hb_000107_110 Hb_000671_130--Hb_000107_110 Hb_048476_060 Hb_048476_060 Hb_000671_130--Hb_048476_060 Hb_006634_110 Hb_006634_110 Hb_122636_010--Hb_006634_110 Hb_002660_110 Hb_002660_110 Hb_122636_010--Hb_002660_110 Hb_001217_010 Hb_001217_010 Hb_122636_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_122636_010--Hb_100137_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34622 4.79302 10.4612 38.5423 2.68893 2.85614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.44235 4.9313 3.2043 4.67216 9.65547

CAGE analysis