Hb_003207_180

Information

Type -
Description -
Location Contig3207: 211024-216146
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08680g
description POPTRDRAFT_751389; hypothetical protein
nr
ID XP_012087012.1
description PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
swissprot
ID Q9JIH2
description Nuclear pore complex protein Nup50 OS=Mus musculus GN=Nup50 PE=1 SV=3
trembl
ID A0A067K141
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20675 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33916: 213848-217103
cDNA
(Sanger)
(ID:Location)		 007_C11.ab1: 215093-217103

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_180 0.0 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
2 Hb_001472_100 0.0736331379 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
3 Hb_000260_630 0.0757318524 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
4 Hb_000300_260 0.0794145001 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
5 Hb_003848_040 0.0796778655 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
6 Hb_000069_720 0.0823528204 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
7 Hb_000130_270 0.0829293711 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
8 Hb_000035_160 0.0865965585 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
9 Hb_161574_020 0.0874499604 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
10 Hb_007878_010 0.0886400472 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
11 Hb_001105_170 0.0889048405 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
12 Hb_000599_260 0.0909944981 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
13 Hb_005271_040 0.0916319957 - - PREDICTED: serine racemase [Jatropha curcas]
14 Hb_000076_220 0.0920527396 - - thioredoxin domain-containing protein, putative [Ricinus communis]
15 Hb_012565_070 0.0920802077 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_000875_080 0.0925074593 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
17 Hb_001863_380 0.0931710374 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
18 Hb_000976_120 0.0933889432 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
19 Hb_032202_100 0.0936511144 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
20 Hb_163175_010 0.0980841572 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_003207_180 Hb_003207_180 Hb_001472_100 Hb_001472_100 Hb_003207_180--Hb_001472_100 Hb_000260_630 Hb_000260_630 Hb_003207_180--Hb_000260_630 Hb_000300_260 Hb_000300_260 Hb_003207_180--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_003207_180--Hb_003848_040 Hb_000069_720 Hb_000069_720 Hb_003207_180--Hb_000069_720 Hb_000130_270 Hb_000130_270 Hb_003207_180--Hb_000130_270 Hb_000976_120 Hb_000976_120 Hb_001472_100--Hb_000976_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_000110_310 Hb_000110_310 Hb_001472_100--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_001472_100--Hb_107879_010 Hb_000270_680 Hb_000270_680 Hb_001472_100--Hb_000270_680 Hb_000260_630--Hb_000976_120 Hb_003861_060 Hb_003861_060 Hb_000260_630--Hb_003861_060 Hb_000875_080 Hb_000875_080 Hb_000260_630--Hb_000875_080 Hb_005271_040 Hb_005271_040 Hb_000260_630--Hb_005271_040 Hb_005000_170 Hb_005000_170 Hb_000260_630--Hb_005000_170 Hb_000260_630--Hb_001472_100 Hb_004312_010 Hb_004312_010 Hb_000300_260--Hb_004312_010 Hb_000173_310 Hb_000173_310 Hb_000300_260--Hb_000173_310 Hb_012565_070 Hb_012565_070 Hb_000300_260--Hb_012565_070 Hb_003213_010 Hb_003213_010 Hb_000300_260--Hb_003213_010 Hb_001723_150 Hb_001723_150 Hb_000300_260--Hb_001723_150 Hb_000086_170 Hb_000086_170 Hb_000300_260--Hb_000086_170 Hb_001105_170 Hb_001105_170 Hb_003848_040--Hb_001105_170 Hb_003848_040--Hb_012565_070 Hb_012340_090 Hb_012340_090 Hb_003848_040--Hb_012340_090 Hb_003848_040--Hb_000300_260 Hb_003848_040--Hb_001472_100 Hb_001301_110 Hb_001301_110 Hb_000069_720--Hb_001301_110 Hb_004157_050 Hb_004157_050 Hb_000069_720--Hb_004157_050 Hb_003878_090 Hb_003878_090 Hb_000069_720--Hb_003878_090 Hb_003678_020 Hb_003678_020 Hb_000069_720--Hb_003678_020 Hb_000167_010 Hb_000167_010 Hb_000069_720--Hb_000167_010 Hb_000840_200 Hb_000840_200 Hb_000069_720--Hb_000840_200 Hb_032202_100 Hb_032202_100 Hb_000130_270--Hb_032202_100 Hb_161574_020 Hb_161574_020 Hb_000130_270--Hb_161574_020 Hb_163175_010 Hb_163175_010 Hb_000130_270--Hb_163175_010 Hb_006846_130 Hb_006846_130 Hb_000130_270--Hb_006846_130 Hb_000076_220 Hb_000076_220 Hb_000130_270--Hb_000076_220 Hb_000130_270--Hb_000086_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56193 2.79868 8.43193 5.78424 3.00353 3.80967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.85163 6.65768 3.46429 4.6343 3.46228

CAGE analysis