Hb_003207_190

Information

Type -
Description -
Location Contig3207: 217982-223108
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12100g
description POPTRDRAFT_830820; hypothetical protein
nr
ID XP_011029174.1
description PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Populus euphratica]
swissprot
ID Q9LDX3
description UDP-galactose/UDP-glucose transporter 4 OS=Arabidopsis thaliana GN=UTR4 PE=2 SV=1
trembl
ID U5GP07
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08690g PE=4 SV=1
Gene Ontology
ID GO:0016021
description udp-galactose udp-glucose transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33917: 218807-219032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_190 0.0 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Populus euphratica]
2 Hb_153112_020 0.0657142186 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
3 Hb_000671_090 0.0834483982 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
4 Hb_011224_110 0.084812641 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
5 Hb_002284_010 0.0864870411 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000331_080 0.0871303481 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
7 Hb_000834_270 0.0905462059 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
8 Hb_010422_060 0.0905593888 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
9 Hb_002609_020 0.0905909011 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
10 Hb_002163_020 0.0909217018 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
11 Hb_002928_130 0.0921497611 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
12 Hb_000009_160 0.0921738326 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
13 Hb_000926_250 0.0922120691 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
14 Hb_005539_350 0.0928413565 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000020_060 0.0930628056 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
16 Hb_158467_010 0.0950146828 - - transporter, putative [Ricinus communis]
17 Hb_000010_460 0.0951458039 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
18 Hb_028995_040 0.0952260347 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
19 Hb_000270_270 0.0961174131 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
20 Hb_010080_090 0.0965947541 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003207_190 Hb_003207_190 Hb_153112_020 Hb_153112_020 Hb_003207_190--Hb_153112_020 Hb_000671_090 Hb_000671_090 Hb_003207_190--Hb_000671_090 Hb_011224_110 Hb_011224_110 Hb_003207_190--Hb_011224_110 Hb_002284_010 Hb_002284_010 Hb_003207_190--Hb_002284_010 Hb_000331_080 Hb_000331_080 Hb_003207_190--Hb_000331_080 Hb_000834_270 Hb_000834_270 Hb_003207_190--Hb_000834_270 Hb_153112_020--Hb_000331_080 Hb_000840_030 Hb_000840_030 Hb_153112_020--Hb_000840_030 Hb_004994_100 Hb_004994_100 Hb_153112_020--Hb_004994_100 Hb_153112_020--Hb_011224_110 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080 Hb_000009_160 Hb_000009_160 Hb_000671_090--Hb_000009_160 Hb_007479_020 Hb_007479_020 Hb_000671_090--Hb_007479_020 Hb_158467_010 Hb_158467_010 Hb_000671_090--Hb_158467_010 Hb_000979_230 Hb_000979_230 Hb_000671_090--Hb_000979_230 Hb_000270_370 Hb_000270_370 Hb_000671_090--Hb_000270_370 Hb_000671_090--Hb_000834_270 Hb_004657_050 Hb_004657_050 Hb_011224_110--Hb_004657_050 Hb_002163_020 Hb_002163_020 Hb_011224_110--Hb_002163_020 Hb_001277_070 Hb_001277_070 Hb_011224_110--Hb_001277_070 Hb_011224_110--Hb_000331_080 Hb_005539_350 Hb_005539_350 Hb_011224_110--Hb_005539_350 Hb_005941_040 Hb_005941_040 Hb_002284_010--Hb_005941_040 Hb_029866_060 Hb_029866_060 Hb_002284_010--Hb_029866_060 Hb_002284_010--Hb_002163_020 Hb_000635_180 Hb_000635_180 Hb_002284_010--Hb_000635_180 Hb_002301_140 Hb_002301_140 Hb_002284_010--Hb_002301_140 Hb_028995_040 Hb_028995_040 Hb_002284_010--Hb_028995_040 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000331_080--Hb_000840_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050 Hb_000146_020 Hb_000146_020 Hb_000834_270--Hb_000146_020 Hb_002963_010 Hb_002963_010 Hb_000834_270--Hb_002963_010 Hb_012675_060 Hb_012675_060 Hb_000834_270--Hb_012675_060 Hb_010080_090 Hb_010080_090 Hb_000834_270--Hb_010080_090 Hb_002918_200 Hb_002918_200 Hb_000834_270--Hb_002918_200 Hb_001722_100 Hb_001722_100 Hb_000834_270--Hb_001722_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.38332 4.52941 6.93761 3.10415 8.52757 9.89047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6202 14.6741 14.2444 6.11724 2.77001

CAGE analysis