Hb_003207_210

Information

Type -
Description -
Location Contig3207: 237758-240354
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12110g
description hypothetical protein
nr
ID XP_012087009.1
description PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20672 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33919: 237714-239816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_210 0.0 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
2 Hb_164337_010 0.0443454978 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
3 Hb_005694_170 0.0897632703 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
4 Hb_003376_110 0.0903552708 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004316_020 0.1011359186 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
6 Hb_009421_090 0.114118766 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
7 Hb_000371_030 0.1311053346 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
8 Hb_003502_040 0.1313377855 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
9 Hb_004225_160 0.1332940381 - - PREDICTED: kiwellin-like [Jatropha curcas]
10 Hb_000933_040 0.1339814627 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
11 Hb_003248_030 0.1341295713 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
12 Hb_000856_230 0.1345011845 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
13 Hb_000056_290 0.1361469587 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000200_270 0.1394972932 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
15 Hb_000283_090 0.1397237044 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_002540_100 0.1401115567 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
17 Hb_001398_110 0.1417373366 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
18 Hb_000392_170 0.1452634703 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
19 Hb_000331_020 0.1471339359 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000213_020 0.1478404148 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003207_210 Hb_003207_210 Hb_164337_010 Hb_164337_010 Hb_003207_210--Hb_164337_010 Hb_005694_170 Hb_005694_170 Hb_003207_210--Hb_005694_170 Hb_003376_110 Hb_003376_110 Hb_003207_210--Hb_003376_110 Hb_004316_020 Hb_004316_020 Hb_003207_210--Hb_004316_020 Hb_009421_090 Hb_009421_090 Hb_003207_210--Hb_009421_090 Hb_000371_030 Hb_000371_030 Hb_003207_210--Hb_000371_030 Hb_164337_010--Hb_005694_170 Hb_164337_010--Hb_003376_110 Hb_164337_010--Hb_004316_020 Hb_164337_010--Hb_000371_030 Hb_164337_010--Hb_009421_090 Hb_005694_170--Hb_003376_110 Hb_007846_030 Hb_007846_030 Hb_005694_170--Hb_007846_030 Hb_000933_040 Hb_000933_040 Hb_005694_170--Hb_000933_040 Hb_003248_030 Hb_003248_030 Hb_005694_170--Hb_003248_030 Hb_003376_110--Hb_007846_030 Hb_000160_190 Hb_000160_190 Hb_003376_110--Hb_000160_190 Hb_000056_290 Hb_000056_290 Hb_003376_110--Hb_000056_290 Hb_006873_010 Hb_006873_010 Hb_004316_020--Hb_006873_010 Hb_000392_170 Hb_000392_170 Hb_004316_020--Hb_000392_170 Hb_003502_040 Hb_003502_040 Hb_004316_020--Hb_003502_040 Hb_004316_020--Hb_003248_030 Hb_014700_020 Hb_014700_020 Hb_009421_090--Hb_014700_020 Hb_000856_230 Hb_000856_230 Hb_009421_090--Hb_000856_230 Hb_000200_270 Hb_000200_270 Hb_009421_090--Hb_000200_270 Hb_115962_010 Hb_115962_010 Hb_009421_090--Hb_115962_010 Hb_003767_030 Hb_003767_030 Hb_009421_090--Hb_003767_030 Hb_008821_030 Hb_008821_030 Hb_000371_030--Hb_008821_030 Hb_001117_020 Hb_001117_020 Hb_000371_030--Hb_001117_020 Hb_004788_030 Hb_004788_030 Hb_000371_030--Hb_004788_030 Hb_019429_020 Hb_019429_020 Hb_000371_030--Hb_019429_020 Hb_002540_100 Hb_002540_100 Hb_000371_030--Hb_002540_100 Hb_003847_090 Hb_003847_090 Hb_000371_030--Hb_003847_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.95359 11.7385 5.79033 0 0.0141442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0301941 0.73758

CAGE analysis