Hb_003207_220

Information

Type transcription factor
Description TF Family: AP2
Location Contig3207: 250362-253201
Sequence    

Annotation

kegg
ID rcu:RCOM_1683570
description Dehydration-responsive element-binding protein 1F, putative
nr
ID XP_012087007.1
description PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
swissprot
ID Q9FJ93
description Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1
trembl
ID A0A067JZT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20671 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dehydration-responsive element binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33920: 250251-255655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_220 0.0 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
2 Hb_002999_150 0.0679138558 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
3 Hb_052764_120 0.0774889696 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
4 Hb_002435_010 0.1044090127 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
5 Hb_002267_010 0.1045304608 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
6 Hb_107174_010 0.1111451512 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_010578_020 0.1237372045 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_116420_050 0.1271554595 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
9 Hb_071654_010 0.1283768089 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
10 Hb_127372_010 0.1290639407 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
11 Hb_000251_170 0.1302016641 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
12 Hb_027065_010 0.1317728853 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
13 Hb_048141_060 0.1510160587 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
14 Hb_007919_070 0.1526087901 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
15 Hb_010223_010 0.1538991712 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
16 Hb_000280_100 0.1555760992 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
17 Hb_012146_010 0.1568375467 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
18 Hb_007894_040 0.1591935815 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
19 Hb_055877_010 0.1662183202 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_001361_010 0.1685781732 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003207_220 Hb_003207_220 Hb_002999_150 Hb_002999_150 Hb_003207_220--Hb_002999_150 Hb_052764_120 Hb_052764_120 Hb_003207_220--Hb_052764_120 Hb_002435_010 Hb_002435_010 Hb_003207_220--Hb_002435_010 Hb_002267_010 Hb_002267_010 Hb_003207_220--Hb_002267_010 Hb_107174_010 Hb_107174_010 Hb_003207_220--Hb_107174_010 Hb_010578_020 Hb_010578_020 Hb_003207_220--Hb_010578_020 Hb_002999_150--Hb_107174_010 Hb_002999_150--Hb_052764_120 Hb_002999_150--Hb_002267_010 Hb_071654_010 Hb_071654_010 Hb_002999_150--Hb_071654_010 Hb_007894_040 Hb_007894_040 Hb_002999_150--Hb_007894_040 Hb_052764_120--Hb_002267_010 Hb_052764_120--Hb_010578_020 Hb_052764_120--Hb_002435_010 Hb_048141_060 Hb_048141_060 Hb_052764_120--Hb_048141_060 Hb_002435_010--Hb_002267_010 Hb_002435_010--Hb_010578_020 Hb_002435_010--Hb_048141_060 Hb_000668_190 Hb_000668_190 Hb_002435_010--Hb_000668_190 Hb_002267_010--Hb_071654_010 Hb_002267_010--Hb_048141_060 Hb_000164_030 Hb_000164_030 Hb_002267_010--Hb_000164_030 Hb_010223_010 Hb_010223_010 Hb_107174_010--Hb_010223_010 Hb_000192_030 Hb_000192_030 Hb_107174_010--Hb_000192_030 Hb_107174_010--Hb_007894_040 Hb_107174_010--Hb_071654_010 Hb_004724_250 Hb_004724_250 Hb_010578_020--Hb_004724_250 Hb_010578_020--Hb_048141_060 Hb_010578_020--Hb_002267_010 Hb_010578_020--Hb_000164_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0207767 25.1781 82.6302 6.75959 0 0.0172779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.3729

CAGE analysis