Hb_003207_230

Information

Type transcription factor
Description TF Family: ERF
Location Contig3207: 254987-258089
Sequence    

Annotation

kegg
ID rcu:RCOM_1683570
description Dehydration-responsive element-binding protein 1F, putative
nr
ID XP_012087006.1
description PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
swissprot
ID Q9FJ93
description Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1
trembl
ID A0A067K136
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33922: 257349-257639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_230 0.0 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
2 Hb_124953_010 0.0460248291 - - hypothetical protein RCOM_1314600 [Ricinus communis]
3 Hb_000032_150 0.074413595 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
4 Hb_099188_010 0.0790067822 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_005054_330 0.0807465489 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
6 Hb_047955_010 0.0809515106 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
7 Hb_000359_230 0.0817416903 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
8 Hb_002548_030 0.0819444865 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
9 Hb_007858_020 0.0823355575 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
10 Hb_110356_010 0.0897722378 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
11 Hb_004032_220 0.0959963749 - - Calmodulin, putative [Ricinus communis]
12 Hb_002542_030 0.0987214993 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
13 Hb_000627_130 0.0988118975 - - Polcalcin Jun o, putative [Ricinus communis]
14 Hb_000164_160 0.102529765 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
15 Hb_167186_010 0.1040971545 - - cation-transporting atpase plant, putative [Ricinus communis]
16 Hb_128851_020 0.1078828527 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_034581_010 0.1100283082 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
18 Hb_001153_250 0.1100918247 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
19 Hb_008725_220 0.1132044503 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
20 Hb_001677_140 0.1147104547 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_003207_230 Hb_003207_230 Hb_124953_010 Hb_124953_010 Hb_003207_230--Hb_124953_010 Hb_000032_150 Hb_000032_150 Hb_003207_230--Hb_000032_150 Hb_099188_010 Hb_099188_010 Hb_003207_230--Hb_099188_010 Hb_005054_330 Hb_005054_330 Hb_003207_230--Hb_005054_330 Hb_047955_010 Hb_047955_010 Hb_003207_230--Hb_047955_010 Hb_000359_230 Hb_000359_230 Hb_003207_230--Hb_000359_230 Hb_124953_010--Hb_000032_150 Hb_007858_020 Hb_007858_020 Hb_124953_010--Hb_007858_020 Hb_124953_010--Hb_005054_330 Hb_124953_010--Hb_047955_010 Hb_004032_220 Hb_004032_220 Hb_124953_010--Hb_004032_220 Hb_000032_150--Hb_047955_010 Hb_001257_040 Hb_001257_040 Hb_000032_150--Hb_001257_040 Hb_000032_150--Hb_007858_020 Hb_000032_150--Hb_004032_220 Hb_002548_030 Hb_002548_030 Hb_099188_010--Hb_002548_030 Hb_128851_020 Hb_128851_020 Hb_099188_010--Hb_128851_020 Hb_099188_010--Hb_000359_230 Hb_110356_010 Hb_110356_010 Hb_099188_010--Hb_110356_010 Hb_001677_140 Hb_001677_140 Hb_099188_010--Hb_001677_140 Hb_034581_010 Hb_034581_010 Hb_099188_010--Hb_034581_010 Hb_005054_330--Hb_007858_020 Hb_167186_010 Hb_167186_010 Hb_005054_330--Hb_167186_010 Hb_000959_240 Hb_000959_240 Hb_005054_330--Hb_000959_240 Hb_008725_220 Hb_008725_220 Hb_005054_330--Hb_008725_220 Hb_000164_160 Hb_000164_160 Hb_005054_330--Hb_000164_160 Hb_047955_010--Hb_000359_230 Hb_002252_030 Hb_002252_030 Hb_047955_010--Hb_002252_030 Hb_157957_010 Hb_157957_010 Hb_047955_010--Hb_157957_010 Hb_000359_230--Hb_002548_030 Hb_000359_230--Hb_110356_010 Hb_000359_230--Hb_034581_010 Hb_000359_230--Hb_001677_140 Hb_000359_230--Hb_128851_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 71.3533 40.0184 16.1303 0 0.0195874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0483298 1.1469

CAGE analysis