Hb_003209_010

Information

Type -
Description -
Location Contig3209: 14485-15809
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16880g
description POPTRDRAFT_724072; hypothetical protein
nr
ID XP_002315013.1
description hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HXL9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s16880g PE=4 SV=1
Gene Ontology
ID GO:0000023
description hypothetical protein POPTR_0010s16880g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33923: 14549-15779
cDNA
(Sanger)
(ID:Location)		 025_P19.ab1: 14550-15750 , 034_H01.ab1: 14562-15779 , 053_F16.ab1: 14575-15779

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_010 0.0 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
2 Hb_000922_340 0.0900799651 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
3 Hb_005914_050 0.1045643174 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
4 Hb_005333_200 0.112933459 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
5 Hb_009178_070 0.1199774509 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
6 Hb_004117_040 0.1240487144 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
7 Hb_002150_130 0.1311359315 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
8 Hb_002759_120 0.1325110542 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000120_990 0.1355163173 - - PREDICTED: MATE efflux family protein 3, chloroplastic-like [Jatropha curcas]
10 Hb_000042_290 0.1360438908 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
11 Hb_012545_040 0.1363247152 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_042083_040 0.1419392873 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003948_020 0.1420395408 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
14 Hb_001124_190 0.1420728811 - - conserved hypothetical protein [Ricinus communis]
15 Hb_169209_010 0.1423229492 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
16 Hb_000473_050 0.1442458244 - - chromatin regulatory protein sir2, putative [Ricinus communis]
17 Hb_000676_020 0.1446065803 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
18 Hb_002498_160 0.1470358516 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
19 Hb_005563_010 0.1485682073 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
20 Hb_000608_390 0.149095314 - - hypothetical protein B456_010G140700 [Gossypium raimondii]

Gene co-expression network

sample Hb_003209_010 Hb_003209_010 Hb_000922_340 Hb_000922_340 Hb_003209_010--Hb_000922_340 Hb_005914_050 Hb_005914_050 Hb_003209_010--Hb_005914_050 Hb_005333_200 Hb_005333_200 Hb_003209_010--Hb_005333_200 Hb_009178_070 Hb_009178_070 Hb_003209_010--Hb_009178_070 Hb_004117_040 Hb_004117_040 Hb_003209_010--Hb_004117_040 Hb_002150_130 Hb_002150_130 Hb_003209_010--Hb_002150_130 Hb_000473_050 Hb_000473_050 Hb_000922_340--Hb_000473_050 Hb_000042_290 Hb_000042_290 Hb_000922_340--Hb_000042_290 Hb_042083_040 Hb_042083_040 Hb_000922_340--Hb_042083_040 Hb_000922_340--Hb_005333_200 Hb_000120_990 Hb_000120_990 Hb_000922_340--Hb_000120_990 Hb_005914_050--Hb_002150_130 Hb_012545_040 Hb_012545_040 Hb_005914_050--Hb_012545_040 Hb_001124_190 Hb_001124_190 Hb_005914_050--Hb_001124_190 Hb_000176_010 Hb_000176_010 Hb_005914_050--Hb_000176_010 Hb_000676_020 Hb_000676_020 Hb_005914_050--Hb_000676_020 Hb_003752_090 Hb_003752_090 Hb_005333_200--Hb_003752_090 Hb_000152_490 Hb_000152_490 Hb_005333_200--Hb_000152_490 Hb_005333_200--Hb_004117_040 Hb_000465_440 Hb_000465_440 Hb_005333_200--Hb_000465_440 Hb_001793_020 Hb_001793_020 Hb_005333_200--Hb_001793_020 Hb_009178_070--Hb_002150_130 Hb_088500_010 Hb_088500_010 Hb_009178_070--Hb_088500_010 Hb_009178_070--Hb_001124_190 Hb_009178_070--Hb_005914_050 Hb_009178_070--Hb_000922_340 Hb_006829_080 Hb_006829_080 Hb_004117_040--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_004117_040--Hb_172632_060 Hb_001959_060 Hb_001959_060 Hb_004117_040--Hb_001959_060 Hb_004117_040--Hb_002150_130 Hb_002986_090 Hb_002986_090 Hb_004117_040--Hb_002986_090 Hb_002150_130--Hb_000042_290 Hb_002150_130--Hb_000176_010 Hb_000627_300 Hb_000627_300 Hb_002150_130--Hb_000627_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2085 14.7716 112.591 66.3341 9.6015 11.8069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.7055 28.4995 19.5234 6.32486 99.3947

CAGE analysis