Hb_003209_020

Information

Type -
Description -
Location Contig3209: 19286-21918
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16870g
description POPTRDRAFT_659236; ankyrin repeat family protein
nr
ID XP_012067741.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
swissprot
ID Q54HW1
description 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1
trembl
ID A0A067KYQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15679 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33924: 19192-21936 , PASA_asmbl_33925: 19982-20185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_020 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
2 Hb_005227_070 0.1279168552 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_000291_280 0.1424215678 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
4 Hb_000427_030 0.1457761172 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000099_200 0.1483897144 - - conserved hypothetical protein [Ricinus communis]
6 Hb_034083_010 0.1485998718 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001388_050 0.1625283237 - - -
8 Hb_000592_050 0.1648395415 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
9 Hb_004650_070 0.1652215186 - - -
10 Hb_010638_020 0.16702103 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
11 Hb_001767_010 0.1693171442 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
12 Hb_012340_010 0.1702183241 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
13 Hb_000976_010 0.170844262 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
14 Hb_011174_070 0.1719904019 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
15 Hb_002903_070 0.1721095655 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
16 Hb_010584_030 0.1740128947 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
17 Hb_000186_240 0.1748292221 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
18 Hb_011218_060 0.1752032914 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
19 Hb_003057_120 0.1801626823 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
20 Hb_098993_010 0.181559537 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003209_020 Hb_003209_020 Hb_005227_070 Hb_005227_070 Hb_003209_020--Hb_005227_070 Hb_000291_280 Hb_000291_280 Hb_003209_020--Hb_000291_280 Hb_000427_030 Hb_000427_030 Hb_003209_020--Hb_000427_030 Hb_000099_200 Hb_000099_200 Hb_003209_020--Hb_000099_200 Hb_034083_010 Hb_034083_010 Hb_003209_020--Hb_034083_010 Hb_001388_050 Hb_001388_050 Hb_003209_020--Hb_001388_050 Hb_005227_070--Hb_034083_010 Hb_012055_020 Hb_012055_020 Hb_005227_070--Hb_012055_020 Hb_005227_070--Hb_000291_280 Hb_002997_100 Hb_002997_100 Hb_005227_070--Hb_002997_100 Hb_098993_010 Hb_098993_010 Hb_005227_070--Hb_098993_010 Hb_000088_040 Hb_000088_040 Hb_005227_070--Hb_000088_040 Hb_000291_280--Hb_000427_030 Hb_000291_280--Hb_098993_010 Hb_000291_280--Hb_000088_040 Hb_022148_010 Hb_022148_010 Hb_000291_280--Hb_022148_010 Hb_127003_010 Hb_127003_010 Hb_000291_280--Hb_127003_010 Hb_011174_070 Hb_011174_070 Hb_000427_030--Hb_011174_070 Hb_002903_070 Hb_002903_070 Hb_000427_030--Hb_002903_070 Hb_001767_010 Hb_001767_010 Hb_000427_030--Hb_001767_010 Hb_004800_160 Hb_004800_160 Hb_000427_030--Hb_004800_160 Hb_000025_480 Hb_000025_480 Hb_000427_030--Hb_000025_480 Hb_003057_120 Hb_003057_120 Hb_000427_030--Hb_003057_120 Hb_001811_020 Hb_001811_020 Hb_000099_200--Hb_001811_020 Hb_000029_020 Hb_000029_020 Hb_000099_200--Hb_000029_020 Hb_000186_240 Hb_000186_240 Hb_000099_200--Hb_000186_240 Hb_010638_020 Hb_010638_020 Hb_000099_200--Hb_010638_020 Hb_006693_030 Hb_006693_030 Hb_000099_200--Hb_006693_030 Hb_000115_330 Hb_000115_330 Hb_000099_200--Hb_000115_330 Hb_034083_010--Hb_012055_020 Hb_032531_030 Hb_032531_030 Hb_034083_010--Hb_032531_030 Hb_000984_180 Hb_000984_180 Hb_034083_010--Hb_000984_180 Hb_001040_170 Hb_001040_170 Hb_034083_010--Hb_001040_170 Hb_000230_110 Hb_000230_110 Hb_034083_010--Hb_000230_110 Hb_001388_050--Hb_001811_020 Hb_001388_050--Hb_000099_200 Hb_001677_110 Hb_001677_110 Hb_001388_050--Hb_001677_110 Hb_001388_050--Hb_000029_020 Hb_001357_080 Hb_001357_080 Hb_001388_050--Hb_001357_080 Hb_001437_230 Hb_001437_230 Hb_001388_050--Hb_001437_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.9056 30.0353 11.6075 31.1717 367.05 229.585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
175.061 141.695 348.245 84.1528 13.3689

CAGE analysis